View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_22 (Length: 233)
Name: NF18889_low_22
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 36627962 - 36628093
Alignment:
| Q |
12 |
gaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttcc |
111 |
Q |
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| T |
36627962 |
gaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttcc |
36628061 |
T |
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| Q |
112 |
atggtaattaattcatgaaatactttaatatt |
143 |
Q |
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| T |
36628062 |
atggtaattaattcatgaaatactttaatatt |
36628093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 36622731 - 36622917
Alignment:
| Q |
18 |
aatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
117 |
Q |
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| T |
36622731 |
aatgttgtctatgaaagaaagtggataaagtttaaggtgagaaggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
36622830 |
T |
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| Q |
118 |
attaattcatgaaat-actttaatattgattgaatgtactgccttaacattaccacaagtggttatatagtgcataaattataagat |
203 |
Q |
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| T |
36622831 |
atcaatctatgctatgacttgtatattgattgaatgtattgacataactatatcacaagtggttatataatgaatgaattataagat |
36622917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 36628124 - 36628201
Alignment:
| Q |
139 |
atattgattgaatgtactgccttaacattaccacaagtggttatatagtgcataaattataagattaagactagtatg |
216 |
Q |
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| T |
36628124 |
atattgattgaatgtactgccttaacaataccacaagtggttatatagtgcataaattataagattaagactagtatg |
36628201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 36634104 - 36634207
Alignment:
| Q |
18 |
aatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
117 |
Q |
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|||||||||||| || |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
36634104 |
aatgttgtctattaaagaaagtggaaaaagtttgagatgag---gagttggtgatgaaggtttgatggtttctcttgaaagtaattcaatctccatggta |
36634200 |
T |
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| Q |
118 |
attaatt |
124 |
Q |
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|| |||| |
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| T |
36634201 |
atcaatt |
36634207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 34328990 - 34328889
Alignment:
| Q |
18 |
aatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
117 |
Q |
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| T |
34328990 |
aatgttgtctatgaaagaaagtgggtatattttgaggtgagaaggagttggtgatgaaggtttgatggtttctctagaaattaattcaatttccatggta |
34328891 |
T |
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| Q |
118 |
at |
119 |
Q |
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|| |
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| T |
34328890 |
at |
34328889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 34320087 - 34319987
Alignment:
| Q |
13 |
aaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttcca |
112 |
Q |
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|||| |||||| || ||||| |||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
34320087 |
aaaaaaatgttatcaatgaaagaaagtggataaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaattaattcaatttcca |
34319988 |
T |
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| Q |
113 |
t |
113 |
Q |
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| T |
34319987 |
t |
34319987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 45307140 - 45307192
Alignment:
| Q |
61 |
ggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccat |
113 |
Q |
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|||||||| ||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
45307140 |
ggagttggcgatgaaggtttgatggtttctctggaaactaattccatttccat |
45307192 |
T |
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