View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_24 (Length: 219)
Name: NF18889_low_24
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 44809566 - 44809760
Alignment:
| Q |
17 |
caattataacgtatgctgaaacaagttctgtgactttgcttgattcattgacaggtcagtgtatgatattacttctcagaagcacatgatgttgatataa |
116 |
Q |
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| T |
44809566 |
caattataatgtatgctgaaacaagttctgtgactttgcttgattcattgacaggtcagtgtatgatattacttctcagaagcacatgatgttgatataa |
44809665 |
T |
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| Q |
117 |
gtaatatctgcttgtgcaaatttgtcttttcagttcatggnnnnnnnnag-aacagtactgcgatttggaccgcgacatcaaggttgatgatgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44809666 |
gtaatatctgcttgtgcaaatttgtcttttcagttcatggttttttttagaaacagtactgcgatttggaccgcgacatcaaggttgatgatgtc |
44809760 |
T |
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