View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_4 (Length: 475)
Name: NF18889_low_4
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 415
Target Start/End: Original strand, 40465225 - 40465630
Alignment:
| Q |
25 |
ggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttcagaaggataaacaaccccagattgccaggtgtatat |
124 |
Q |
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| T |
40465225 |
ggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttcagaaggataaacaaccccagattgccaggtgtatat |
40465324 |
T |
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| Q |
125 |
tgatagataagtttgtaaatttaaactataacataaaaatgctacaagagnnnnnnnntcatgcaaccactagtt--cccacttgaatgaataatcacac |
222 |
Q |
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| T |
40465325 |
tgatagataagtttgtaaatttgaactatagcataaaaatgctacaagag-aaaaaaatcatgcaaccactagttcccccacttgaatgaataatcacac |
40465423 |
T |
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| Q |
223 |
acaaaaatacaaatgcgaaacttagatattgagataacaaaagtatggttgaaattcacttaaaataagcaactcttgtgtagcatgtttagtcattttc |
322 |
Q |
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| T |
40465424 |
acaaaaatacaaattcgaaacttagatattgagataacaaaagtatggttgaaattcacttaaaataagcaactcttgtgtagcatgtttagtcattttc |
40465523 |
T |
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| Q |
323 |
----------tttattttattttgaaatgaagatatgatatgaat----gcttccaaagttgcataactttacctctcttggcattagtgttttgggaat |
408 |
Q |
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| T |
40465524 |
tttattttattttattttattttgaaatgaagatatgatatgaatgcaagcttccaaagttgcataactttacctctcttggcattagtgttttcggaat |
40465623 |
T |
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| Q |
409 |
cactctg |
415 |
Q |
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| T |
40465624 |
cactctg |
40465630 |
T |
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