View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_5 (Length: 474)
Name: NF18889_low_5
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 39 - 289
Target Start/End: Original strand, 769294 - 769544
Alignment:
| Q |
39 |
aagtacaatcatgataagtagacaaagacaatgacattaacttcgatatgtttgaagtacatccacagttatgtactatatccgaaataaggaatggatc |
138 |
Q |
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| T |
769294 |
aagtacaatcacgataagtagacaaagacaatcacattgacttcgatatgtttgaagtacatccacagttatgtactatatccgaaataaggaatggatc |
769393 |
T |
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| Q |
139 |
cccaattattttccatcatgtctttcacatatgttccatttcatcatatagaaaaatggttttcatgtagattcaatctcgttgaataaagaaaaaagta |
238 |
Q |
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| T |
769394 |
cccaattattttccatcatgtctttcacatatgttccatttcatcatatagaaaaatggttttcatgtagattcaatctcgttgattaaagaaaaaagta |
769493 |
T |
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| Q |
239 |
agatgagttattaacataaaaattgagtnnnnnnnttaatggtggattccc |
289 |
Q |
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| T |
769494 |
ggatgagttattaacataaaaattgagtaaaaaaattaatggtggattccc |
769544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 769581 - 769708
Alignment:
| Q |
326 |
cgcaggaatagataaaacatagtttgattcaatggaaactttttctactgttactcaaagcatgatataaaactaaaatactttcaacgcaatgtgattt |
425 |
Q |
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| T |
769581 |
cgcaggaatagataaaacatagtttgattcaatggaaactttttctactgttactcaaagcatgatataaaactaaaatactttcaacgcaatgtgattt |
769680 |
T |
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| Q |
426 |
cacctaacataaaccaggatggtactag |
453 |
Q |
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| T |
769681 |
cacctaacataaaccaggatggtactag |
769708 |
T |
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