View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18889_low_6 (Length: 454)
Name: NF18889_low_6
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 19506319 - 19506731
Alignment:
| Q |
16 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19506319 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
19506418 |
T |
|
| Q |
116 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcatctgttgggaatccagtgagatatgagagtctca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19506419 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcacgtaggttcatctgttgggaatccagtgagatatgagagtctca |
19506518 |
T |
|
| Q |
216 |
gagactacagcttcagatattttacggcaaaaccatgttttgacaaggaaggaaaagccatcaaagttggtaaagttacagtattggaaaacatgaatag |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
19506519 |
gagactactgcttcagatattttacggcaaaaccatgttttgacaaggaaggaaaagccatcaaagttggtaaagttacggtattggaaaatatgaatag |
19506618 |
T |
|
| Q |
316 |
cttccaaagatacatgtacattcgttacttgcttccattaaaggttatttctaatcctcatttacttatatttttccattcatgcaacacttggctttta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19506619 |
cttccaaagatacatgtacattcgttacttgcttccattaaaggttatttctaatcctcatttacttatatttttccattcatgcaacacttgactttta |
19506718 |
T |
|
| Q |
416 |
ttaaaactttgtc |
428 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
19506719 |
ttaaaactatgtc |
19506731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 36194326 - 36194208
Alignment:
| Q |
83 |
aagcagatccctgctgatatggtggtgaatgcaatgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcat |
182 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||||| ||||||| ||||| |||||||||||||||| | |||| | |||||||||||||||| | |
|
|
| T |
36194326 |
aagcagataccagctgacatggtggtcaatgcaatgttagtggctatggtggctcatgcaaatcaacctagagatg---gggtatatcatgtgggttcct |
36194230 |
T |
|
| Q |
183 |
ctgttgggaatccagtgagata |
204 |
Q |
| |
|
||||| | || ||| ||||||| |
|
|
| T |
36194229 |
ctgttagaaacccattgagata |
36194208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University