View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_high_12 (Length: 376)

Name: NF18890_high_12
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_high_12
NF18890_high_12
[»] chr1 (5 HSPs)
chr1 (18-343)||(34808886-34809211)
chr1 (32-100)||(1226691-1226759)
chr1 (44-102)||(5700076-5700135)
chr1 (22-102)||(24419553-24419634)
chr1 (23-67)||(28359001-28359044)
[»] chr5 (4 HSPs)
chr5 (30-99)||(28499810-28499880)
chr5 (44-104)||(32522570-32522631)
chr5 (33-76)||(22398111-22398154)
chr5 (20-99)||(20269484-20269564)
[»] chr4 (1 HSPs)
chr4 (30-103)||(38562164-38562238)
[»] chr8 (1 HSPs)
chr8 (18-104)||(39282101-39282189)
[»] chr6 (3 HSPs)
chr6 (23-102)||(6071919-6071998)
chr6 (41-99)||(31159116-31159175)
chr6 (23-102)||(24252908-24252982)
[»] chr3 (1 HSPs)
chr3 (41-100)||(31836450-31836510)
[»] chr2 (1 HSPs)
chr2 (43-99)||(33956327-33956384)
[»] chr7 (1 HSPs)
chr7 (32-76)||(21393357-21393401)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 34809211 - 34808886
Alignment:
Q  18 ataacaaaaatgaatttttaagattcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaatgtattagtatactacga 116  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||| |||||||||||||||||| |    
T  34809211 ataacaaaaacgaatttttaaggttcattgaataattattatattagatcatatttatatatcagatacattagttatttaatgtattagtatactacaa 34809112  T
Q  117 ctgggatgttcttaatattgggtttgaaaaaacataaaaagactaaatttcgatgcagttcaccattgataatgcatgctttgttttagtcgagaacagc 216  Q
    | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||||||||||    
T  34809111 c-ggtatgttcttaatatagggtttgaaaaaacataaaaagactaaatttcgatgcagttcacctttgataatgtatgtgttgttttagtcgagaacagc 34809013  T
Q  217 tttgtgtctatagcacatcatctaaattttagtctcttaaaacacagctgtgaaagaggtcagtccattaaattaattttgagaatttgctttcacattt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34809012 tttgtgtctatagcacatcatctaaattttagtctcttaaaacacagctgtgaaagaggtcagtccattaaattaattttgagaatttgctttcacattt 34808913  T
Q  317 tcacttggagtagaatagtctccacaa 343  Q
    |||||||||| ||||||||||||||||    
T  34808912 tcacttggagaagaatagtctccacaa 34808886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 1226691 - 1226759
Alignment:
Q  32 tttttaagattcattgaataattattgtattcggtcatatttatatatcaatacattaattattcaatg 100  Q
    ||||| |||||| |||||||| || |||||| ||||||||||||| |  ||||||||| ||||||||||    
T  1226691 ttttttagattcgttgaataaataatgtatttggtcatatttatagacaaatacattagttattcaatg 1226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 5700076 - 5700135
Alignment:
Q  44 attgaataattattgtattcggtcatatttatatatc-aatacattaattattcaatgta 102  Q
    |||||||||||| ||||| || ||||||||||| ||| ||| ||||||||||||||||||    
T  5700076 attgaataattaatgtatccgatcatatttatagatcaaatgcattaattattcaatgta 5700135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 24419553 - 24419634
Alignment:
Q  22 caaaaatgaatttttaagattcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaatgta 102  Q
    |||||| ||| |||| |||||||||||| || || ||||| | |||||| |||||  ||| |||||||||||||||||||||    
T  24419553 caaaaaagaactttttagattcattgaagaactaatgtatccagtcataattataagtcagatacattaattattcaatgta 24419634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 28359044 - 28359001
Alignment:
Q  23 aaaaatgaatttttaagattcattgaataattattgtattcggtc 67  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||    
T  28359044 aaaaatgaatttttaa-attcattgaataattaatgtatttggtc 28359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 28499810 - 28499880
Alignment:
Q  30 aatttttaagattcattgaataattattgtattcggtcatatttatata-tcaatacattaattattcaat 99  Q
    ||||||| ||||||||||||||| || ||||| |||||||| ||||| | | |||||||||||||||||||    
T  28499810 aattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaattattcaat 28499880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 32522570 - 32522631
Alignment:
Q  44 attgaataattattgtattcggtcatatttatatatca-atacattaattattcaatgtatt 104  Q
    |||||||||||| ||||| | |||| ||||||| |||| |||||||||||||||||||||||    
T  32522570 attgaataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgtatt 32522631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 22398154 - 22398111
Alignment:
Q  33 ttttaagattcattgaataattattgtattcggtcatatttata 76  Q
    |||| |||||||||||||||||| |||||| |||||||||||||    
T  22398154 tttttagattcattgaataattaatgtatttggtcatatttata 22398111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 20269564 - 20269484
Alignment:
Q  20 aacaaaaatgaatttttaagattcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaat 99  Q
    ||||||||  ||||||| |||| ||||||||||||| ||||||  ||||||||| ||  ||| |||||| |||||||||||    
T  20269564 aacaaaaaacaattttttagatacattgaataattaatgtatttcgtcatatttgtaggtcagatacatcaattattcaat 20269484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 38562238 - 38562164
Alignment:
Q  30 aatttttaagattcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaatgtat 103  Q
    ||||||| |||| ||||||||||||| ||||| |||||| |||||||   || ||||||||||||||||||||||    
T  38562238 aattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattattcaatgtat 38562164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 39282101 - 39282189
Alignment:
Q  18 ataacaaaaatgaattttta-agattcattgaataattattgtattcggtcatatttatatatc-aatacattaattattcaatgtatt 104  Q
    ||||||||||| |||||||  || |||||||||||| || |||||||| ||||| |||||  || ||||| ||||||||||||||||||    
T  39282101 ataacaaaaattaatttttttaggttcattgaataaataatgtattcgatcataattatagctcaaatacgttaattattcaatgtatt 39282189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 6071998 - 6071919
Alignment:
Q  23 aaaaatgaatttttaagattcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaatgta 102  Q
    |||||||| |||||| | || |||||||||||| ||||||||||||||||||||| ||| ||| |||| ||||| ||||||    
T  6071998 aaaaatgattttttacgttt-attgaataattaatgtattcggtcatatttatatctcagatatattagttatttaatgta 6071919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 31159116 - 31159175
Alignment:
Q  41 ttcattgaataattattgtattcggtcatatttatatatca-atacattaattattcaat 99  Q
    ||||||||||||||| |||||||||||| |||||||| | | |||||||| |||||||||    
T  31159116 ttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaat 31159175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 24252908 - 24252982
Alignment:
Q  23 aaaaatgaatttttaagattcattgaataattattgtattcggtcatatttatatatcaatacattaattattcaatgta 102  Q
    |||||||| ||||||||  | |||||||||||| |||||||||||| |||||||     |||||||||||||||||||||    
T  24252908 aaaaatgactttttaagtat-attgaataattaatgtattcggtcacatttata----gatacattaattattcaatgta 24252982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 31836450 - 31836510
Alignment:
Q  41 ttcattgaataattattgtattcggtcatatttatatatc-aatacattaattattcaatg 100  Q
    ||||||||||||||| ||||||  |||||||||||| | | ||||||||||||||||||||    
T  31836450 ttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatg 31836510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 33956327 - 33956384
Alignment:
Q  43 cattgaataattattgtattcggtcatatttatatatca-atacattaattattcaat 99  Q
    ||||||||||||| ||||| ||||||||||||||  | | ||||||||||||||||||    
T  33956327 cattgaataattaatgtatccggtcatatttataagttagatacattaattattcaat 33956384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 21393401 - 21393357
Alignment:
Q  32 tttttaagattcattgaataattattgtattcggtcatatttata 76  Q
    ||||| ||||||||||||||||||||| ||| | |||||||||||    
T  21393401 ttttttagattcattgaataattattgcatttgatcatatttata 21393357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University