View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_high_13 (Length: 375)

Name: NF18890_high_13
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_high_13
NF18890_high_13
[»] chr3 (52 HSPs)
chr3 (16-368)||(53620128-53620479)
chr3 (49-150)||(47789554-47789655)
chr3 (47-150)||(30131994-30132096)
chr3 (101-153)||(3707030-3707082)
chr3 (47-149)||(29623106-29623210)
chr3 (49-150)||(34306019-34306120)
chr3 (49-156)||(35282961-35283066)
chr3 (101-150)||(41962083-41962132)
chr3 (101-150)||(43237215-43237264)
chr3 (48-153)||(32858700-32858807)
chr3 (47-81)||(517806-517840)
chr3 (44-78)||(53664421-53664455)
chr3 (101-150)||(3043226-3043275)
chr3 (101-150)||(33982827-33982876)
chr3 (177-226)||(39114960-39115009)
chr3 (101-150)||(47714780-47714829)
chr3 (101-150)||(49860760-49860809)
chr3 (101-150)||(55439508-55439557)
chr3 (53-153)||(27921838-27921941)
chr3 (46-78)||(37674310-37674342)
chr3 (41-81)||(43237521-43237561)
chr3 (52-156)||(3537083-3537187)
chr3 (272-315)||(35283250-35283293)
chr3 (47-78)||(36598122-36598153)
chr3 (101-152)||(38515175-38515226)
chr3 (44-75)||(47359250-47359281)
chr3 (49-153)||(1133029-1133135)
chr3 (47-81)||(2927731-2927765)
chr3 (47-81)||(3537437-3537471)
chr3 (101-143)||(36796347-36796389)
chr3 (47-81)||(38456485-38456519)
chr3 (47-81)||(39499429-39499463)
chr3 (47-81)||(47789262-47789296)
chr3 (47-80)||(1132756-1132789)
chr3 (173-226)||(1132931-1132984)
chr3 (101-150)||(23163448-23163497)
chr3 (101-150)||(24242200-24242249)
chr3 (49-78)||(38639471-38639500)
chr3 (101-150)||(43007604-43007653)
chr3 (49-78)||(44400590-44400619)
chr3 (101-150)||(44412262-44412311)
chr3 (101-150)||(46312529-46312578)
chr3 (44-93)||(47434107-47434156)
chr3 (49-78)||(53664769-53664798)
chr3 (48-81)||(55439816-55439849)
chr3 (49-81)||(40119061-40119093)
chr3 (49-81)||(44411972-44412004)
chr3 (45-81)||(45555505-45555541)
chr3 (46-78)||(48908707-48908739)
chr3 (49-81)||(48909050-48909082)
chr3 (49-81)||(49861067-49861099)
chr3 (49-93)||(54126155-54126199)
[»] chr1 (67 HSPs)
chr1 (46-159)||(50586917-50587029)
chr1 (47-150)||(27499854-27499957)
chr1 (49-154)||(17556540-17556644)
chr1 (49-152)||(52073553-52073657)
chr1 (46-153)||(36886739-36886846)
chr1 (49-146)||(1523465-1523563)
chr1 (49-150)||(40707306-40707407)
chr1 (47-156)||(49103054-49103162)
chr1 (47-150)||(38794840-38794943)
chr1 (44-150)||(1688324-1688425)
chr1 (101-150)||(23871571-23871620)
chr1 (49-150)||(47905797-47905898)
chr1 (47-148)||(51246673-51246774)
chr1 (49-153)||(26940478-26940582)
chr1 (102-156)||(47742456-47742510)
chr1 (44-151)||(50599068-50599175)
chr1 (101-150)||(13255268-13255317)
chr1 (102-150)||(32295569-32295617)
chr1 (102-150)||(33991466-33991514)
chr1 (47-156)||(36269613-36269722)
chr1 (49-150)||(43572060-43572160)
chr1 (49-93)||(45565348-45565392)
chr1 (47-81)||(34154505-34154539)
chr1 (101-150)||(2926042-2926091)
chr1 (101-150)||(17688262-17688311)
chr1 (47-156)||(28718893-28719003)
chr1 (272-317)||(49102848-49102893)
chr1 (49-93)||(9595780-9595824)
chr1 (49-146)||(12293682-12293779)
chr1 (49-93)||(39179271-39179315)
chr1 (57-150)||(39889766-39889859)
chr1 (273-317)||(50084291-50084335)
chr1 (47-78)||(2909019-2909050)
chr1 (46-150)||(11017468-11017572)
chr1 (42-77)||(18421086-18421121)
chr1 (175-226)||(33324657-33324708)
chr1 (47-78)||(40136449-40136480)
chr1 (49-80)||(41432949-41432980)
chr1 (46-93)||(50402961-50403008)
chr1 (45-133)||(50476419-50476502)
chr1 (101-159)||(7915437-7915495)
chr1 (47-150)||(13061508-13061611)
chr1 (47-93)||(15464030-15464076)
chr1 (47-81)||(29091957-29091991)
chr1 (43-93)||(30538585-30538634)
chr1 (47-81)||(33991773-33991807)
chr1 (110-152)||(36385275-36385317)
chr1 (47-93)||(50247815-50247861)
chr1 (47-81)||(51303350-51303384)
chr1 (49-82)||(666253-666286)
chr1 (49-78)||(5584387-5584416)
chr1 (49-78)||(5584744-5584773)
chr1 (105-150)||(14152628-14152673)
chr1 (101-150)||(26757263-26757312)
chr1 (47-80)||(41432578-41432611)
chr1 (101-150)||(42162161-42162210)
chr1 (272-317)||(50097777-50097822)
chr1 (102-150)||(938346-938394)
chr1 (273-317)||(5883477-5883521)
chr1 (49-77)||(27255081-27255109)
chr1 (46-78)||(28727515-28727547)
chr1 (49-81)||(32299334-32299366)
chr1 (49-81)||(32300286-32300318)
chr1 (49-81)||(37649793-37649825)
chr1 (49-81)||(38795196-38795228)
chr1 (49-77)||(47742408-47742436)
chr1 (173-217)||(50476560-50476604)
[»] chr6 (18 HSPs)
chr6 (49-156)||(26713735-26713842)
chr6 (45-150)||(24734755-24734855)
chr6 (47-133)||(2365722-2365808)
chr6 (175-226)||(20820536-20820587)
chr6 (101-150)||(1029217-1029266)
chr6 (173-226)||(26713885-26713938)
chr6 (101-150)||(29241941-29241990)
chr6 (42-81)||(5825563-5825602)
chr6 (53-133)||(26481252-26481332)
chr6 (175-226)||(29054601-29054652)
chr6 (43-81)||(4909692-4909730)
chr6 (47-81)||(29241649-29241683)
chr6 (51-81)||(32719552-32719582)
chr6 (101-146)||(14275910-14275955)
chr6 (48-81)||(33590504-33590537)
chr6 (53-81)||(1567157-1567185)
chr6 (46-78)||(4584307-4584339)
chr6 (101-149)||(5825257-5825305)
[»] chr2 (46 HSPs)
chr2 (51-156)||(16625883-16625988)
chr2 (49-156)||(16519191-16519297)
chr2 (48-149)||(3039057-3039158)
chr2 (47-156)||(4003298-4003407)
chr2 (45-150)||(12964080-12964185)
chr2 (49-150)||(18780254-18780357)
chr2 (51-138)||(11522286-11522373)
chr2 (101-149)||(19382802-19382850)
chr2 (101-153)||(36030738-36030790)
chr2 (49-150)||(44137029-44137125)
chr2 (175-226)||(15803212-15803263)
chr2 (103-150)||(25960718-25960765)
chr2 (49-149)||(32761383-32761483)
chr2 (47-81)||(11514914-11514948)
chr2 (47-81)||(16813506-16813540)
chr2 (47-81)||(16852785-16852819)
chr2 (44-81)||(6655985-6656022)
chr2 (272-317)||(11522055-11522100)
chr2 (44-81)||(18826044-18826081)
chr2 (47-125)||(31550382-31550460)
chr2 (48-81)||(43572725-43572758)
chr2 (46-78)||(1365057-1365089)
chr2 (49-150)||(30312513-30312609)
chr2 (46-78)||(34757830-34757862)
chr2 (45-81)||(37201792-37201828)
chr2 (103-150)||(6711940-6711987)
chr2 (47-150)||(14008435-14008539)
chr2 (46-93)||(42644864-42644911)
chr2 (49-78)||(1364715-1364744)
chr2 (49-78)||(5322288-5322317)
chr2 (101-150)||(8555884-8555933)
chr2 (49-78)||(11515278-11515307)
chr2 (105-154)||(12941905-12941953)
chr2 (272-317)||(15803335-15803380)
chr2 (101-150)||(18826340-18826389)
chr2 (101-150)||(32243399-32243448)
chr2 (49-78)||(39204824-39204853)
chr2 (47-80)||(44137309-44137342)
chr2 (102-150)||(8411038-8411086)
chr2 (49-81)||(13018655-13018687)
chr2 (49-81)||(14008147-14008179)
chr2 (101-153)||(31082740-31082792)
chr2 (47-75)||(32761112-32761140)
chr2 (102-150)||(36567386-36567434)
chr2 (53-81)||(37194142-37194170)
chr2 (102-150)||(38023553-38023601)
[»] chr4 (57 HSPs)
chr4 (47-150)||(7182299-7182402)
chr4 (48-150)||(38317337-38317439)
chr4 (47-150)||(41363920-41364023)
chr4 (51-153)||(35959072-35959172)
chr4 (49-156)||(46177029-46177136)
chr4 (101-154)||(54205760-54205813)
chr4 (49-150)||(24279786-24279887)
chr4 (47-150)||(16535561-16535664)
chr4 (101-150)||(37756821-37756870)
chr4 (101-150)||(48830923-48830972)
chr4 (47-149)||(54806345-54806447)
chr4 (49-150)||(38365901-38366002)
chr4 (47-156)||(52636631-52636740)
chr4 (103-150)||(17873122-17873169)
chr4 (179-226)||(28880029-28880076)
chr4 (47-93)||(675241-675287)
chr4 (51-150)||(13270381-13270475)
chr4 (44-81)||(31530254-31530291)
chr4 (44-81)||(45899513-45899550)
chr4 (173-226)||(48417606-48417659)
chr4 (47-80)||(52430732-52430765)
chr4 (101-150)||(56504576-56504625)
chr4 (102-150)||(904122-904170)
chr4 (49-150)||(3127119-3127219)
chr4 (47-159)||(21081215-21081332)
chr4 (276-315)||(3075639-3075678)
chr4 (46-93)||(18964893-18964940)
chr4 (44-87)||(29576305-29576348)
chr4 (46-81)||(38137011-38137046)
chr4 (46-81)||(41844666-41844701)
chr4 (175-226)||(47063716-47063767)
chr4 (47-81)||(20534158-20534192)
chr4 (47-93)||(21357978-21358024)
chr4 (47-81)||(22845048-22845082)
chr4 (47-81)||(29114411-29114445)
chr4 (272-318)||(46669816-46669862)
chr4 (47-92)||(8827984-8828029)
chr4 (175-220)||(13984976-13985021)
chr4 (48-93)||(31340658-31340703)
chr4 (272-317)||(31418829-31418874)
chr4 (101-150)||(31529943-31529992)
chr4 (44-81)||(38366257-38366294)
chr4 (47-80)||(43793957-43793990)
chr4 (102-159)||(45022818-45022875)
chr4 (101-154)||(48620204-48620256)
chr4 (47-80)||(48620512-48620545)
chr4 (173-226)||(51258735-51258788)
chr4 (47-76)||(55813794-55813823)
chr4 (273-317)||(6836563-6836607)
chr4 (101-149)||(13269877-13269925)
chr4 (53-93)||(21295940-21295980)
chr4 (49-81)||(27485419-27485451)
chr4 (49-150)||(31187202-31187303)
chr4 (53-93)||(31419060-31419100)
chr4 (49-93)||(32648822-32648866)
chr4 (49-81)||(33500392-33500424)
chr4 (101-153)||(45971486-45971538)
[»] chr7 (43 HSPs)
chr7 (47-153)||(3658616-3658722)
chr7 (49-149)||(33406741-33406841)
chr7 (45-156)||(38505436-38505547)
chr7 (101-150)||(23620901-23620950)
chr7 (101-150)||(33113749-33113798)
chr7 (101-150)||(34652159-34652208)
chr7 (173-217)||(19644323-19644367)
chr7 (46-150)||(36747165-36747270)
chr7 (47-150)||(7667272-7667376)
chr7 (47-150)||(5968151-5968253)
chr7 (101-150)||(28437650-28437699)
chr7 (101-150)||(42620459-42620508)
chr7 (47-91)||(1277802-1277846)
chr7 (49-81)||(4058316-4058348)
chr7 (49-81)||(16805744-16805776)
chr7 (47-91)||(46611967-46612011)
chr7 (46-81)||(34651868-34651903)
chr7 (47-81)||(30081236-30081270)
chr7 (46-80)||(33113458-33113492)
chr7 (48-78)||(38137821-38137851)
chr7 (176-226)||(38505340-38505390)
chr7 (272-317)||(4787875-4787920)
chr7 (46-75)||(17884364-17884393)
chr7 (101-150)||(19644225-19644274)
chr7 (272-317)||(22556577-22556622)
chr7 (272-317)||(32228931-32228976)
chr7 (45-78)||(33188024-33188057)
chr7 (47-80)||(33871776-33871809)
chr7 (52-93)||(36747519-36747560)
chr7 (272-317)||(40985272-40985317)
chr7 (49-81)||(7666982-7667014)
chr7 (53-81)||(15749126-15749154)
chr7 (53-81)||(19791563-19791591)
chr7 (49-81)||(28437359-28437391)
chr7 (49-81)||(33872231-33872263)
chr7 (49-81)||(38236023-38236055)
chr7 (276-316)||(38679864-38679904)
chr7 (49-81)||(41471377-41471409)
chr7 (49-81)||(42382926-42382958)
chr7 (45-81)||(42854116-42854152)
chr7 (49-93)||(43189076-43189120)
chr7 (49-81)||(46442581-46442613)
chr7 (64-153)||(46745692-46745780)
[»] chr5 (44 HSPs)
chr5 (49-150)||(35700932-35701033)
chr5 (50-148)||(35704583-35704681)
chr5 (101-150)||(38302461-38302510)
chr5 (48-156)||(10437857-10437965)
chr5 (49-150)||(10295354-10295456)
chr5 (53-150)||(27480278-27480375)
chr5 (106-149)||(4649096-4649139)
chr5 (175-226)||(32125269-32125320)
chr5 (49-156)||(35708855-35708962)
chr5 (47-81)||(1935241-1935275)
chr5 (101-150)||(1658101-1658150)
chr5 (173-226)||(9096341-9096394)
chr5 (48-81)||(13569260-13569293)
chr5 (101-150)||(26149527-26149576)
chr5 (46-78)||(5772545-5772577)
chr5 (49-81)||(6491086-6491118)
chr5 (45-81)||(32824531-32824567)
chr5 (175-226)||(3676511-3676562)
chr5 (50-81)||(9096195-9096226)
chr5 (46-81)||(18670902-18670937)
chr5 (175-226)||(19389824-19389875)
chr5 (103-141)||(6816258-6816296)
chr5 (47-81)||(10295717-10295751)
chr5 (44-78)||(10842922-10842956)
chr5 (47-81)||(17093128-17093162)
chr5 (47-81)||(25598585-25598619)
chr5 (49-156)||(35683575-35683682)
chr5 (47-81)||(38120011-38120045)
chr5 (47-81)||(39649440-39649474)
chr5 (101-150)||(2020905-2020954)
chr5 (104-153)||(6491427-6491476)
chr5 (47-80)||(6620471-6620504)
chr5 (47-80)||(9684607-9684640)
chr5 (180-228)||(13450508-13450557)
chr5 (48-77)||(35683290-35683319)
chr5 (173-226)||(37909023-37909076)
chr5 (49-93)||(1658395-1658439)
chr5 (46-78)||(10376994-10377026)
chr5 (101-133)||(13449865-13449897)
chr5 (102-150)||(17092823-17092871)
chr5 (46-78)||(21571929-21571961)
chr5 (48-80)||(33718413-33718445)
chr5 (277-317)||(35704780-35704820)
chr5 (49-77)||(43496379-43496407)
[»] chr8 (38 HSPs)
chr8 (47-150)||(34272384-34272488)
chr8 (49-150)||(3404681-3404782)
chr8 (49-150)||(1942141-1942241)
chr8 (46-150)||(37659639-37659743)
chr8 (47-150)||(36906062-36906160)
chr8 (50-150)||(6691-6791)
chr8 (49-156)||(79715-79823)
chr8 (101-156)||(39193855-39193910)
chr8 (47-93)||(21262740-21262786)
chr8 (47-80)||(1839636-1839669)
chr8 (101-150)||(4734604-4734653)
chr8 (45-81)||(1941864-1941900)
chr8 (48-80)||(23932735-23932767)
chr8 (49-93)||(34148398-34148442)
chr8 (101-149)||(34304640-34304688)
chr8 (49-93)||(42651519-42651563)
chr8 (47-82)||(26772817-26772852)
chr8 (102-149)||(31297456-31297503)
chr8 (47-159)||(35376727-35376839)
chr8 (51-93)||(3635641-3635683)
chr8 (217-299)||(13258593-13258676)
chr8 (47-77)||(27085218-27085248)
chr8 (52-127)||(31149799-31149874)
chr8 (49-78)||(1839999-1840028)
chr8 (101-154)||(1840309-1840362)
chr8 (173-226)||(10605153-10605206)
chr8 (53-86)||(40677032-40677065)
chr8 (45-78)||(41866296-41866329)
chr8 (47-79)||(1111305-1111337)
chr8 (46-82)||(9309722-9309758)
chr8 (49-77)||(12319123-12319151)
chr8 (47-91)||(13406299-13406343)
chr8 (175-226)||(16424171-16424223)
chr8 (49-81)||(21174034-21174066)
chr8 (106-150)||(29611921-29611965)
chr8 (178-226)||(31305781-31305829)
chr8 (49-81)||(33230864-33230896)
chr8 (49-81)||(36906420-36906452)
[»] scaffold1163 (1 HSPs)
scaffold1163 (50-153)||(1931-2034)
[»] scaffold0051 (2 HSPs)
scaffold0051 (47-81)||(6935-6969)
scaffold0051 (47-81)||(7918-7952)
[»] scaffold0036 (1 HSPs)
scaffold0036 (48-156)||(82666-82775)
[»] scaffold0717 (1 HSPs)
scaffold0717 (47-81)||(1810-1844)
[»] scaffold0248 (1 HSPs)
scaffold0248 (51-81)||(373-403)
[»] scaffold0028 (2 HSPs)
scaffold0028 (47-81)||(35271-35305)
scaffold0028 (49-150)||(35562-35663)
[»] scaffold0388 (1 HSPs)
scaffold0388 (52-81)||(6940-6969)
[»] scaffold0031 (2 HSPs)
scaffold0031 (45-78)||(93309-93342)
scaffold0031 (49-78)||(93676-93705)
[»] scaffold0373 (1 HSPs)
scaffold0373 (273-317)||(8979-9023)
[»] scaffold0136 (1 HSPs)
scaffold0136 (49-81)||(2199-2231)
[»] scaffold0128 (1 HSPs)
scaffold0128 (45-81)||(26247-26283)
[»] scaffold0061 (1 HSPs)
scaffold0061 (46-78)||(46555-46587)
[»] scaffold0017 (1 HSPs)
scaffold0017 (46-78)||(152200-152232)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 52)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 53620128 - 53620479
Alignment:
Q  16 aatatgactgcataatacatccacttaatctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgg 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||       |||||||||||||||    
T  53620128 aatatgactgcataatacattcacttaatctttaggctttgtttgcgagtttggaggggaagggaggtgagggctttggaaaaaaggaaggagcaagtgg 53620227  T
Q  116 gagaaatagaggacattgagaggagagggctttggggggttcataatacaaaatctttcaaaaattgtattggatgaggattttagaggatttatatgaa 215  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53620228 gagaaatagaggacattgagagcggagggctttgggggtttcataatacaaaatctttcaaaaattgtattggatgaggattttagagggtttatatgaa 53620327  T
Q  216 ttcttaaaattaaaacatactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttctcaaatttttcctata 315  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  53620328 ttattaaaattaaaacatactaattgtaagaattaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagatttctcaaatttttcctata 53620427  T
Q  316 ttacccctccctccaaacaaagccttaggaaattattacaagacaaaactgat 368  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53620428 ttacccctccctccaaacaaagccttagg-aattattacaagacaaaactgat 53620479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 47789655 - 47789554
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| ||||||||||||||||||||  ||||||| |        ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  47789655 aggctttgtttgggagtttggaggggaagggaggggagggttgtagaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagcttt 47789556  T
Q  149 gg 150  Q
    ||    
T  47789555 gg 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 30132096 - 30131994
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| || ||||||||||| |||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  30132096 ttaggctttgtttgggaatttggaggggaggggaggggagggtttcgaaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggct 30131998  T
Q  147 ttgg 150  Q
    ||||    
T  30131997 ttgg 30131994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 3707030 - 3707082
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  3707030 ggaaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg 3707082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 29623106 - 29623210
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn--ggaaggagcaagtgggagaaatagaggacattgagaggagaggg 144  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||         ||||||||||||||| ||||||||||||||||  |||| |||||    
T  29623106 ttaggctttgtttgcgagtttagaggggaagagaggggagggttttgagaaaaaaaggaaggagcaagtggaagaaatagaggacattaggaggggaggg 29623205  T
Q  145 ctttg 149  Q
    |||||    
T  29623206 ctttg 29623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 34306019 - 34306120
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaaggg-agatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    |||||||||||| ||||||||||||| |||| ||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  34306019 aggctttgtttgggagtttggagggggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 34306117  T
Q  148 tgg 150  Q
    |||    
T  34306118 tgg 34306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 35282961 - 35283066
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||       ||||||||||||||| ||||||||||  ||||| |||||| | |||||    
T  35282961 aggctttgtttgcgagtttggaggggaaggaaggggaggg-tttggtaaaaaggaaggagcaagtggaagaaatagagatcattgggaggag-gagcttt 35283058  T
Q  149 ggggggtt 156  Q
    ||||||||    
T  35283059 ggggggtt 35283066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 41962132 - 41962083
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41962132 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41962083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 43237215 - 43237264
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43237215 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 43237264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 32858700 - 32858807
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    ||||||||||||||||||||||||||||||| ||  ||||| ||||         |||| |||||||||| ||||||||| ||||||||||||  | |||    
T  32858700 taggctttgtttgcgagtttggaggggaaggaaggggaggggtttggaaaaaaaaggaatgagcaagtggaagaaatagatgacattgagagggaaaggc 32858799  T
Q  146 tttggggg 153  Q
    ||||||||    
T  32858800 tttggggg 32858807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 517840 - 517806
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  517840 ttaggctttgtttgcgagtttggaggggaagggag 517806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 53664421 - 53664455
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||||||    
T  53664421 tctttaggctttgtttgcgagtttggaggggaagg 53664455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 3043275 - 3043226
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  3043275 ggaaggagcaagtggaagaaatagaagacattgggaggagaggcctttgg 3043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 33982876 - 33982827
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  33982876 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 33982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 39115009 - 39114960
Alignment:
Q  177 aaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| |||||    
T  39115009 aaattgtattggaggaggactttagagggtttatatgaattcttcaaatt 39114960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 47714829 - 47714780
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47714829 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 47714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 49860760 - 49860809
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  49860760 ggaaggagcaattggaagaaatagaagacattgggaggagagggctttgg 49860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 55439508 - 55439557
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  55439508 ggaatgagcaagtggaagaaatagaggacattgggaggagaggactttgg 55439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 27921838 - 27921941
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtg---ggagaaatagaggacattgagaggagagggctttg 149  Q
    |||||||||||||||||||||||||||||| || ||||| |       |||| ||| |||||   | |||| |||||||||||| ||||||||| |||||    
T  27921838 tttgtttgcgagtttggaggggaagggagacgacggtttggaaaaaaaggaaagagtaagtggaagaagaagtagaggacattgggaggagaggactttg 27921937  T
Q  150 gggg 153  Q
    ||||    
T  27921938 gggg 27921941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 37674342 - 37674310
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||||    
T  37674342 tttaggctttgtttgcgagtttggaggggaagg 37674310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 43237561 - 43237521
Alignment:
Q  41 taatctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  43237561 taatatttaggctttgtttgggagtttggaggggaagggag 43237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 3537083 - 3537187
Alignment:
Q  52 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggg 151  Q
    ||||||||||||||||||||||||||||||  || || |||        |||| ||| |||||| |||||||||||| | || |||| ||||||||||||    
T  3537083 ctttgtttgcgagtttggaggggaagggaggggaaggctttagaaaaaaggaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttggg 3537182  T
Q  152 gggtt 156  Q
     ||||    
T  3537183 aggtt 3537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 35283250 - 35283293
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctata 315  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  35283250 tactctttcaaaaaatgtgaaagatttctcaattttctcctata 35283293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 36598122 - 36598153
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||||    
T  36598122 ttaggctttgtttgcgagtttggaggggaagg 36598153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 38515175 - 38515226
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 152  Q
    ||||||||||||||  ||||||||| || |||| ||||||||||||||||||    
T  38515175 ggaaggagcaagtgaaagaaatagaagatattgggaggagagggctttgggg 38515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 47359250 - 47359281
Alignment:
Q  44 tctttaggctttgtttgcgagtttggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  47359250 tctttaggctttgtttgcgagtttggagggga 47359281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 1133135 - 1133029
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||         |||| ||||||||||  |||||||| |||||||||||| || || |    
T  1133135 aggctttgtttgcgagtttgtaggggaagggaggggaggggtttggaaaaaaaaggaatgagcaagtggacgaaatagatgacattgagaggggaaggtt 1133036  T
Q  147 ttggggg 153  Q
    |||||||    
T  1133035 ttggggg 1133029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 2927731 - 2927765
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||| ||||||||||||    
T  2927731 ttaggctttgtttgcgagtttgcaggggaagggag 2927765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 3537471 - 3537437
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  3537471 ttaggctttgtttgggagtttggaggggaagggag 3537437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 36796347 - 36796389
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagg 143  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  36796347 ggaaggagcaagtggaagaaatagaagacattgggaggagagg 36796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 38456485 - 38456519
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  38456485 ttaggctttgtttgggagtttggaggggaagggag 38456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 39499463 - 39499429
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  39499463 ttaggctttgtttgggagtttggaggggaagggag 39499429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 47789262 - 47789296
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  47789262 ttaggctttgtttgggagtttggaggggaagggag 47789296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 1132756 - 1132789
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    |||||||||||||| |||||||||||||||||||    
T  1132756 ttaggctttgtttgggagtttggaggggaaggga 1132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 1132984 - 1132931
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||||| |||| |||| |||| |||| |||||||||| |||||    
T  1132984 tcaaaaattgtattggaggagggttttggagggtttacatgaattctttaaatt 1132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 23163448 - 23163497
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| |||||   ||||||||||||||||    
T  23163448 ggaaggagcaagtggaagaaatagaagacatcaggaggagagggctttgg 23163497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 24242249 - 24242200
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  24242249 ggaaggagcaagtggaagaaatagaagatattgggaggagaggactttgg 24242200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 38639471 - 38639500
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  38639471 aggctttgtttgcgagtttggaggggaagg 38639500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 43007653 - 43007604
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||||||||||    
T  43007653 ggaagtagcaagtggaagaaatagaagatattgggaggagagggctttgg 43007604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 44400590 - 44400619
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  44400590 aggctttgtttgcgagtttggaggggaagg 44400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 44412311 - 44412262
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  44412311 ggaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 44412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 46312578 - 46312529
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||  |||||| ||||||||| ||||||| ||||||||||||||||    
T  46312578 ggaaggactaagtggaagaaatagaagacattgggaggagagggctttgg 46312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 47434107 - 47434156
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||| |||||||||| |||||||||||||||| |||  ||||||||||    
T  47434107 tctttaagctttgtttgggagtttggaggggaagagaggggagggttttg 47434156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 53664798 - 53664769
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  53664798 aggctttgtttgcgagtttggaggggaagg 53664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 55439849 - 55439816
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||| ||||||||||||||||||||    
T  55439849 taggctttgtttgggagtttggaggggaagggag 55439816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 40119093 - 40119061
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||| |||||    
T  40119093 aggctttgtttgcgagtttggaggggaggggag 40119061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 44411972 - 44412004
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  44411972 aggctttgtttgggagtttggaggggaagggag 44412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 45555505 - 45555541
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||| |||||||||||||| |||||    
T  45555505 ctttaggctttgtttgggagtttggaggggatgggag 45555541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 48908707 - 48908739
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||| |||||||||||||||||    
T  48908707 tttaggctttgtttgggagtttggaggggaagg 48908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 48909082 - 48909050
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||| |||||||||||||||||||    
T  48909082 aggctttgtttgcaagtttggaggggaagggag 48909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 49861099 - 49861067
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  49861099 aggctttgtttgggagtttggaggggaagggag 49861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 54126155 - 54126199
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||| ||||||| ||||||||||||||||||||  ||||||||||    
T  54126155 aggcattgtttgtgagtttggaggggaagggaggggagggttttg 54126199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 67)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 50586917 - 50587029
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    ||||||| |||||||| |||||||||||||||||||| ||| | ||||       ||||||||||||||| |||||||||||||||||||||| ||||||    
T  50586917 tttaggccttgtttgcaagtttggaggggaagggagaggagagctttggaaaaaaggaaggagcaagtggaagaaatagaggacattgagagg-gagggc 50587015  T
Q  146 tttggggggttcat 159  Q
    ||||||||||||||    
T  50587016 tttggggggttcat 50587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 27499854 - 27499957
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| ||||||| |||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  27499854 ttaggctttgtttgggagtttgaaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 27499953  T
Q  147 ttgg 150  Q
    ||||    
T  27499954 ttgg 27499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 17556540 - 17556644
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||||||||||||||||||||||||  |||||||  |       |||||||| |||||| ||||||||||||||||| ||||||| ||||||    
T  17556540 aggctttgtttgcgagtttggaggggaagggaggggagggttcagaaaaaaaggaaggagtaagtggaagaaatagaggacattgggaggaga-ggcttt 17556638  T
Q  149 gggggg 154  Q
    ||||||    
T  17556639 gggggg 17556644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 52073657 - 52073553
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||        ||||||||||||||| ||||||||| |||||||||||| || |||||    
T  52073657 aggctttgtttgcgagtttggaggggaagggaggggaggggtttgcaaaaaaaggaaggagcaagtggaagaaatagatgacattgagaggggaaggctt 52073558  T
Q  148 tgggg 152  Q
    |||||    
T  52073557 tgggg 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 36886739 - 36886846
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    ||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | ||||||| ||||||    
T  36886739 tttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgagaggggagggc 36886838  T
Q  146 tttggggg 153  Q
    ||||||||    
T  36886839 tttggggg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 1523465 - 1523563
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |       |||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  1523465 aggctttgtttgagagtttggaggggatgggagatgagggttttggaaaaaaaggaaggagcaggtggaagaaatagaagacattgggaggagagggct 1523563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 40707407 - 40707306
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||||| |||   || ||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  40707407 aggctttgtttgggagtttggaggggaagagagggaagagttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 40707308  T
Q  149 gg 150  Q
    ||    
T  40707307 gg 40707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 49103162 - 49103054
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |       || ||||| |||||| ||||||||||||||||| |||||| |||||    
T  49103162 ttaggctatgtttgcgagtttggaggggaagggaggggagggtttggaaaaaaagggaggagtaagtggaagaaatagaggacattgggaggag-gggct 49103064  T
Q  147 ttggggggtt 156  Q
    |||| |||||    
T  49103063 ttggagggtt 49103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 38794840 - 38794943
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| ||||||||||| || |||||  ||||||||||       ||||||||||||||| | ||||||| || |||| ||||||||||||    
T  38794840 ttaggctttgtttgggagtttggaggcgaggggagtggagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagatattgggaggagagggct 38794939  T
Q  147 ttgg 150  Q
    ||||    
T  38794940 ttgg 38794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 1688425 - 1688324
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 143  Q
    |||||||||||||||||  ||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| |||||||||    
T  1688425 tctttaggctttgtttggaagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagg 1688331  T
Q  144 gctttgg 150  Q
    |||||||    
T  1688330 gctttgg 1688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 23871620 - 23871571
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23871620 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 23871571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 47905898 - 47905797
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| ||||||||| ||||||| |||||||||| |||    
T  47905898 aggctttgtttgggagtttggaggggagggaaggggagggttttggaaaaaaggaaggagtaagtggaagaaatagaagacattgggaggagagggtttt 47905799  T
Q  149 gg 150  Q
    ||    
T  47905798 gg 47905797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 51246774 - 51246673
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       | ||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  51246774 ttaggctttgtttgggagtttggaggggaggggaggagagggttttgaaaaaaagaaaggagcaagtgaaagaaatagaagacattgggaggaaagggct 51246675  T
Q  147 tt 148  Q
    ||    
T  51246674 tt 51246673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 26940478 - 26940582
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| ||||||||| |||||||  ||||||| ||||     
T  26940478 aggctttgtttgagagtttggaggggagaggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagagagcttc 26940577  T
Q  149 ggggg 153  Q
    |||||    
T  26940578 ggggg 26940582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 47742456 - 47742510
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 156  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  47742456 gaaggagtaagtggaagaaatagaggacattgagaagggagggctttggggggtt 47742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 50599175 - 50599068
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 143  Q
    ||||||| ||||||||||| |||||||||| || ||||  || || ||||       ||||||||||||||| | ||||||||||| |||||||| ||||    
T  50599175 tctttagactttgtttgcgggtttggagggcaatggaggggacggctttgggaaaaaggaaggagcaagtggaaaaaatagaggactttgagaggggagg 50599076  T
Q  144 gctttggg 151  Q
    ||||||||    
T  50599075 gctttggg 50599068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 13255268 - 13255317
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  13255268 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 13255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 32295569 - 32295617
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  32295569 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 32295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 33991466 - 33991514
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33991466 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 36269613 - 36269722
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||||||||||||||||||||||||||||| |||  || || || |       |||| |||||||||| |||||||||| | | || |||| |||||||    
T  36269613 ttaggctttgtttgcgagtttggaggggaagtgaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggct 36269712  T
Q  147 ttggggggtt 156  Q
    ||||||||||    
T  36269713 ttggggggtt 36269722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 43572160 - 43572060
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||   || ||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||||||    
T  43572160 aggctttgtttgggagtttggaggggaggggagggcagagttttgaaaaaaaggaatgagcaagtggaagaaatagaagacattg-gaggagagggcttt 43572062  T
Q  149 gg 150  Q
    ||    
T  43572061 gg 43572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 45565392 - 45565348
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  45565392 aggctttgtttgcgagtttggaggggaagggaggggagggttttg 45565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 34154539 - 34154505
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  34154539 ttaggctttgtttgcgagtttggaggggaagggag 34154505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2926091 - 2926042
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||||||||    
T  2926091 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttgg 2926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 17688262 - 17688311
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  17688262 ggaaggagcaagtggaagaaatagaaaacattgggaggagagggctttgg 17688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 28719003 - 28718893
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |       ||||| ||||||||| |||||||||||| |||| |||| || ||     
T  28719003 ttagactttgtttgcgagtttggaggggaaaggagtggagggttttggaaaaaaaggaagaagcaagtggaagaaatagaggatattgggaggggatggt 28718904  T
Q  146 tttggggggtt 156  Q
    ||| |||||||    
T  28718903 ttttgggggtt 28718893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 49102893 - 49102848
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  49102893 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 49102848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 9595824 - 9595780
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  9595824 aggctttgtttgggagtttggaggggaagggaggggagggttttg 9595780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 12293682 - 12293779
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||| |||||||||||||| | |||  ||||||||||       ||||||| ||||||| ||||||||| || | || ||||||||||||    
T  12293682 aggctttgtttgggagtttggaggggaggagaggggagggttttggaaaaaaggaaggatcaagtggaagaaatagaagaaactgggaggagagggct 12293779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 39179315 - 39179271
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  39179315 aggctttgtttgggagtttggaggggaagggaggggagggttttg 39179271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 39889859 - 39889766
Alignment:
Q  57 tttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| | ||||||| ||||||| ||||||||||||||||    
T  39889859 tttgggagtttggaggggagggaaggggagggttttggaaaatgggaaggagtaagtggaaaaaatagaagacattgggaggagagggctttgg 39889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 50084291 - 50084335
Alignment:
Q  273 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||||||||||||| || ||||||||| |||||||||||||    
T  50084291 actctttcaaaaaatgtgaaaaatttctcaattttttcctatatt 50084335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 2909019 - 2909050
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||||    
T  2909019 ttaggctttgtttgcgagtttggaggggaagg 2909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 11017468 - 11017572
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    |||||||||| | || |||||||||||||| |||||   ||| |||||       ||||||||||||||| ||||||| | ||||||||||| | |||||    
T  11017468 tttaggctttttctgggagtttggaggggaggggagggaaggattttggaaaaaaggaaggagcaagtggaagaaatatatgacattgagagaaaagggc 11017567  T
Q  146 tttgg 150  Q
    |||||    
T  11017568 tttgg 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 18421121 - 18421086
Alignment:
Q  42 aatctttaggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||| |||||||||    
T  18421121 aatctttaggctttgtttgcgagttttgaggggaag 18421086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 33324657 - 33324708
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||    
T  33324657 aaaaattgtattagaggagggttttagagggtttatatgaattcttcaaatt 33324708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 40136480 - 40136449
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||||    
T  40136480 ttaggctttgtttgcgagtttggaggggaagg 40136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 41432980 - 41432949
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||||||||||||||    
T  41432980 aggctttgtttgcgagtttggaggggaaggga 41432949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 50403008 - 50402961
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  50403008 tttaggctttgtttgggagtttggagggtaagggagaggagggctttg 50402961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 50476419 - 50476502
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 133  Q
    |||||||||||||||| |||||||||||||| ||     ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  50476419 ctttaggctttgtttgggagtttggaggggaggg-----gagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattg 50476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 7915437 - 7915495
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 159  Q
    ||||||||||||||| | |||||||| || ||| |||  ||||||||||||||||||||    
T  7915437 ggaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcat 7915495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 13061611 - 13061508
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||||||||||||  ||||| ||||||| |||||   |||||||||       ||||||||||||||| |||||| || ||||||  || |||||||||    
T  13061611 ttaggctttgtttggaagtttagaggggaggggagggaagggttttggaaaaaaggaaggagcaagtggaagaaattgaagacattcggaagagagggct 13061512  T
Q  147 ttgg 150  Q
    ||||    
T  13061511 ttgg 13061508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 15464076 - 15464030
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  15464076 ttaggctttgtttgggagtttgaaggggaagggaggggagggttttg 15464030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 29091957 - 29091991
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||| |||||||||    
T  29091957 ttaggctttgtttgcgagtttggagaggaagggag 29091991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 30538585 - 30538634
Alignment:
Q  43 atctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||||||||||||  |||||||||||||||||| | ||||||||||    
T  30538585 atctttaggctttgtttggaagtttggaggggaaggga-aggagggttttg 30538634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 33991807 - 33991773
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  33991807 ttaggctttgtttgggagtttggaggggaagggag 33991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 36385275 - 36385317
Alignment:
Q  110 aagtgggagaaatagaggacattgagaggagagggctttgggg 152  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  36385275 aagtggaagaaatagaggacattgagagaagagggttttgggg 36385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 50247861 - 50247815
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||||    
T  50247861 ttaggctttctttgggagtttggaggggaagggaggggagggttttg 50247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 51303384 - 51303350
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||| |||||||||||||    
T  51303384 ttaggctttgtttgcgagtttagaggggaagggag 51303350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 666253 - 666286
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggaga 82  Q
    |||||||||||| |||||||||||||||||||||    
T  666253 aggctttgtttgtgagtttggaggggaagggaga 666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 5584387 - 5584416
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  5584387 aggctttgtttgcgagtttggaggggaagg 5584416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 5584773 - 5584744
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  5584773 aggctttgtttgcgagtttggaggggaagg 5584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 14152628 - 14152673
Alignment:
Q  105 ggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  14152628 ggagcaagtggaagaaatagaagacattgggaggagagggttttgg 14152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 26757312 - 26757263
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  26757312 ggaaggagcaaatggaagaaatagaagatattgggaggagagggctttgg 26757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 41432578 - 41432611
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    |||||||||||||| |||||||||||||||||||    
T  41432578 ttaggctttgtttgggagtttggaggggaaggga 41432611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 42162210 - 42162161
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  42162210 ggaaggagcaagtggaagaaatagatgacattggaaggagagggttttgg 42162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 50097777 - 50097822
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| |||||||||||| |||| | ||||||    
T  50097777 tactctttcaaaaaatgtgaaagatttctcaatttttccttatatt 50097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 938394 - 938346
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||| ||||||| ||||||||| || ||||||||||||||| |||||    
T  938394 gaaggatcaagtggaagaaatagaagatattgagaggagagggttttgg 938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 5883521 - 5883477
Alignment:
Q  273 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||| || || ||||||||| |||||||||||||    
T  5883521 actctttcaaaaaatatgaaaaatttctcaattttttcctatatt 5883477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 27255081 - 27255109
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||||||    
T  27255081 aggctttgtttgcgagtttggaggggaag 27255109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 28727515 - 28727547
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  28727515 tttaggctttgtttgcgagttttgaggggaagg 28727547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 32299366 - 32299334
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  32299366 aggctttgtttgggagtttggaggggaagggag 32299334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 32300318 - 32300286
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  32300318 aggctttgtttgggagtttggaggggaagggag 32300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 37649825 - 37649793
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||| ||||    
T  37649825 aggctttgtttgcgagtttggaggggaatggag 37649793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 38795228 - 38795196
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  38795228 aggctttgtttgggagtttggaggggaagggag 38795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 47742408 - 47742436
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||||||    
T  47742408 aggctttgtttgcgagtttggaggggaag 47742436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 50476560 - 50476604
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 217  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||    
T  50476560 tcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 26713735 - 26713842
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||||||||||||||||||||||||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  26713735 aggctttgtttgcgagtttggaggggaagggaggggagggttttggaataaaggaaggagcaagtggaagaaatagagtacattgggaggggagggcttt 26713834  T
Q  149 ggggggtt 156  Q
    | ||||||    
T  26713835 gaggggtt 26713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 24734755 - 24734855
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 144  Q
    |||||||||||||||| ||||||||||||||||||||     |||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||    
T  24734755 ctttaggctttgtttgggagtttggaggggaagggag-----ggttttggaaaaaaggaacgagcaagtggaagaaatagaagacattgggaggagaggg 24734849  T
Q  145 ctttgg 150  Q
    ||||||    
T  24734850 ctttgg 24734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 2365808 - 2365722
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 133  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  2365808 ttaggctttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattg 2365722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 20820587 - 20820536
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||||||||||||||||||  |||||||||||||||||||||| || |||||    
T  20820587 aaaaattgtattggatgagagttttagaggatttatatgaatttttcaaatt 20820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 1029217 - 1029266
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  1029217 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 1029266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 26713885 - 26713938
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  26713885 tcaaaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 26713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 29241990 - 29241941
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  29241990 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 29241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 5825602 - 5825563
Alignment:
Q  42 aatctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  5825602 aatcttaaggctttgtttgggagtttggaggggaagggag 5825563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 26481332 - 26481252
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 133  Q
    |||||||| |||||||||||||| |||||  ||||||||||       ||||| ||||||||| ||||||||| |||||||    
T  26481332 tttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaagtagcaagtggaagaaatagaagacattg 26481252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 29054601 - 29054652
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| || |||||    
T  29054601 aaaaattgtattgaatgaggatttttgagggtttatatgaatttttcaaatt 29054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 4909692 - 4909730
Alignment:
Q  43 atctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  4909692 atcttaaggctttgtttgggagtttggaggggaagggag 4909730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 29241649 - 29241683
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  29241649 ttaggctttgtttgggagtttggaggggaagggag 29241683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 32719582 - 32719552
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||    
T  32719582 gctttgtttgcgagtttggaggggaagggag 32719552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 14275910 - 14275955
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  14275910 ggaatgagcaagtggaagaaatagaagacattgggaggagagggct 14275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 33590537 - 33590504
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  33590537 taggctttgtttgcgagtttggaggggaatggag 33590504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 1567157 - 1567185
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||    
T  1567157 tttgtttgcgagtttggaggggaagggag 1567185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 4584339 - 4584307
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  4584339 tttaggctttgtttgcgagttttgaggggaagg 4584307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 5825257 - 5825305
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    ||||||||||||||  ||||||||| ||||||| ||||||| |||||||    
T  5825257 ggaaggagcaagtgaaagaaatagaagacattgggaggagaaggctttg 5825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 16625988 - 16625883
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||||||||||||||||||||  ||||||||||       ||| ||||||||||| |||||||||| |||||| |||| |||||||||||    
T  16625988 gctttgtttgcgagtttggaggggaagggaggggagggttttggaaaaaaggatggagcaagtggaagaaatagagtacattgggaggggagggctttgg 16625889  T
Q  151 ggggtt 156  Q
    ||||||    
T  16625888 ggggtt 16625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 16519297 - 16519191
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  16519297 aggctttgtttgcgagtttggaggggaagagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagagtacattg-gaggggagggcttt 16519199  T
Q  149 ggggggtt 156  Q
    || |||||    
T  16519198 ggtgggtt 16519191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 3039158 - 3039057
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    ||||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| | ||||||| ||||||| |||||||||||||    
T  3039158 taggctttgtttgggagtttggaggggagaggaggagagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagacattgggaggagagggctt 3039059  T
Q  148 tg 149  Q
    ||    
T  3039058 tg 3039057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 4003298 - 4003407
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||| |||||||||  ||||| ||||       |||| |||||||||| |||||||||||| | || |||| |||||||    
T  4003298 ttaggctttgtttgtgagtttggagtggaagggaggggagggctttggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggct 4003397  T
Q  147 ttggggggtt 156  Q
    ||||||||||    
T  4003398 ttggggggtt 4003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 12964185 - 12964080
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 144  Q
    |||||||||||||||| ||||| |||||||| | |||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |    
T  12964185 ctttaggctttgtttgggagttgggaggggaggagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagag 12964086  T
Q  145 ctttgg 150  Q
    ||||||    
T  12964085 ctttgg 12964080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 18780254 - 18780357
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggac--attgagaggagagggct 146  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       |||||||||| |||| ||||||||| |||  |||| ||||||||||||    
T  18780254 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcacgtggaagaaatagaagacatattgggaggagagggct 18780353  T
Q  147 ttgg 150  Q
    ||||    
T  18780354 ttgg 18780357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 11522373 - 11522286
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagagg 138  Q
    |||||||||||||||||||||||||| ||||  ||||||||||       |||||||| || ||| ||||||||||||||||| ||||    
T  11522373 gctttgtttgcgagtttggaggggaatggaggggagggttttgaaaaaaaggaaggagtaaatggaagaaatagaggacattgggagg 11522286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 19382802 - 19382850
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  19382802 ggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg 19382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 36030738 - 36030790
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  36030738 ggaaggagccagtggaagaaatagaggaccttgagaagagagggctttggggg 36030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 44137029 - 44137125
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  44137029 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaaatggaagaaatagaagacattgggaggagagggcttt 44137123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 15803212 - 15803263
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 15803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 25960765 - 25960718
Alignment:
Q  103 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  25960765 aaggagcaagtggaagaaatagaagacattgaaaggagagggctttgg 25960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 32761483 - 32761383
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||        |||||| ||||||| | ||||||||||||||| | | ||||||||||    
T  32761483 aggctttgattgcgagtttggaggggaagggaggggagggctttgtaaaaaatgaaggatcaagtggaataaatagaggacattgggggcagagggcttt 32761384  T
Q  149 g 149  Q
    |    
T  32761383 g 32761383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 11514914 - 11514948
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  11514914 ttaggctttgtttgcgagtttggaggggaagggag 11514948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 16813506 - 16813540
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  16813506 ttaggctttgtttgcgagtttggaggggaagggag 16813540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 16852785 - 16852819
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  16852785 ttaggctttgtttgcgagtttggaggggaagggag 16852819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 6655985 - 6656022
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6655985 tctttaggctttgtctgcgagtttggaggggaagggag 6656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 11522100 - 11522055
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  11522100 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 11522055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 18826044 - 18826081
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18826044 tctttaggctttgtttgggagtttggaggggaagggag 18826081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 31550460 - 31550382
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaataga 125  Q
    |||||||||||||| |||||||||| ||| |||||  ||||||||||       ||||||||||||||| |||||||||    
T  31550460 ttaggctttgtttgggagtttggagtggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaataga 31550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 43572758 - 43572725
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||||||||||    
T  43572758 taggctttgtttgcgagtttggaggggaagggag 43572725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 1365089 - 1365057
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||||    
T  1365089 tttaggctttgtttgcgagtttggaggggaagg 1365057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 30312609 - 30312513
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| |||||||||  |||||| |||||||||| |||    
T  30312609 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaacacattgggaggagagggtttt 30312515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 34757862 - 34757830
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||||    
T  34757862 tttaggctttgtttgcgagtttggaggggaagg 34757830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 37201828 - 37201792
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37201828 ctttaggctttgtttgcgaatttggaggggaagggag 37201792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 6711987 - 6711940
Alignment:
Q  103 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||| ||| ||| ||||||||| ||||||||||||||||||||||||    
T  6711987 aaggaacaaatggaagaaatagaagacattgagaggagagggctttgg 6711940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 14008539 - 14008435
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||| |        ||||||| |||||| ||||||||| ||||||| || |||| |||    
T  14008539 ttaggctttctttgggagtttggaggggaagggaggggagggttttggaaaaaaaagaaggagtaagtggaagaaatagaagacattgggatgagatggc 14008440  T
Q  146 tttgg 150  Q
    |||||    
T  14008439 tttgg 14008435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 42644911 - 42644864
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  42644911 tttaggctctgtttgggagtttggaggggaagggaggagagggttttg 42644864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 1364715 - 1364744
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  1364715 aggctttgtttgcgagtttggaggggaagg 1364744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 5322317 - 5322288
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  5322317 aggctttgtttgcgagtttggaggggaagg 5322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 8555933 - 8555884
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| |||||    
T  8555933 ggaaggagcaagtggaagaaatagaagacattgggagaagagggttttgg 8555884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 11515307 - 11515278
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  11515307 aggctttgtttgcgagtttggaggggaagg 11515278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 12941953 - 12941905
Alignment:
Q  105 ggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 154  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  12941953 ggagtaagtggaagaaatagaggacattgggagga-agggctttgggggg 12941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 15803335 - 15803380
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||    
T  15803335 tactctttcaaaaaatgtgaaagatttctcaattttcccctatatt 15803380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 18826389 - 18826340
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  18826389 ggaaggagcaagtggaagaaatagaagacattaggaagagagggctttgg 18826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 32243399 - 32243448
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  32243399 ggaaggagcaatgggaagaaatagaagacattgggaggagagggctttgg 32243448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 39204824 - 39204853
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  39204824 aggctttgtttgcgagtttggaggggaagg 39204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 44137342 - 44137309
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    |||||||||||||| |||||||||||||||||||    
T  44137342 ttaggctttgtttgggagtttggaggggaaggga 44137309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 8411086 - 8411038
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  8411086 gaaggagcaagttgaggaaatagaagacattgggaggagagggctttgg 8411038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 13018687 - 13018655
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||| ||||||||||    
T  13018687 aggctttgtttgcgagtttggaagggaagggag 13018655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 14008147 - 14008179
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  14008147 aggctttgtttgggagtttggaggggaagggag 14008179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 31082740 - 31082792
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    |||| |||||||||| |||||||||||| | || |||| ||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggg 31082792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 32761112 - 32761140
Alignment:
Q  47 ttaggctttgtttgcgagtttggagggga 75  Q
    |||||||||||||||||||||||||||||    
T  32761112 ttaggctttgtttgcgagtttggagggga 32761140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 36567434 - 36567386
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36567434 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 37194142 - 37194170
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||    
T  37194142 tttgtttgcgagtttggaggggaagggag 37194170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 38023601 - 38023553
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||| | ||||||||| |||||||| ||||||||| |||||    
T  38023601 gaaggagcaagtagaagaaatagaagacattgaaaggagagggttttgg 38023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 7182402 - 7182299
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||||||||||| |||    
T  7182402 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagct 7182303  T
Q  147 ttgg 150  Q
    ||||    
T  7182302 ttgg 7182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 38317439 - 38317337
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    ||||||||||||| ||||| |||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  38317439 taggctttgtttgggagttgggaggggaggggaggagagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 38317340  T
Q  148 tgg 150  Q
    |||    
T  38317339 tgg 38317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 41364023 - 41363920
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||||||| |||||   | |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  41364023 ttaggctttgtttgggagtttggaggggaggggagggaacggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 41363924  T
Q  147 ttgg 150  Q
    ||||    
T  41363923 ttgg 41363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 35959072 - 35959172
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||||||||||||||||||||  |||| ||| |       ||||||||||||||| |||||||||| |||||| |||| |||||||||||    
T  35959072 gctttgtttgcgagtttggaggggaagggaggggaggttttggaaaga--ggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttgg 35959169  T
Q  151 ggg 153  Q
    |||    
T  35959170 ggg 35959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 46177136 - 46177029
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||        |||||| ||||||| |||||||||| |||||| |||| ||||| |||    
T  46177136 aggctttgtttgtgagtttggagggaaagggaggggagggttttggaaaaaaagaaggaacaagtggaagaaatagagtacattgggaggggagggtttt 46177037  T
Q  149 ggggggtt 156  Q
    ||||||||    
T  46177036 ggggggtt 46177029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 54205760 - 54205813
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 154  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  54205760 ggaaggagcaagtggaagaaatagaggactttgagaggggagggctttgggggg 54205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 24279786 - 24279887
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||| ||| |||||| |||||||||||||  ||||||||||       ||||||||||||||| || |||| | ||||||| ||||||||||||||    
T  24279786 aggctttgattgggagtttagaggggaagggagtggagggttttggaaaaaaggaaggagcaagtggaaggaataaaagacattgggaggagagggcttt 24279885  T
Q  149 gg 150  Q
    ||    
T  24279886 gg 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 16535561 - 16535664
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||| |||||||| |||||| |||||||  ||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  16535561 ttaggttttgtttgggagtttagaggggagaggaggggagggtttgggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 16535660  T
Q  147 ttgg 150  Q
    ||||    
T  16535661 ttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 37756870 - 37756821
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  37756870 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 37756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 48830972 - 48830923
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  48830972 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 48830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 54806345 - 54806447
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||        || ||||||||||| || |||| | ||||||| ||||||||||||    
T  54806345 ttaggctttgtttgggagtttggagaggaagggaggggagggttttggaaaaaatgatggagcaagtggaaggaataaaagacattgggaggagagggct 54806444  T
Q  147 ttg 149  Q
    |||    
T  54806445 ttg 54806447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 38365901 - 38366002
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  ||| |||||        ||||||||||||||| ||||||||| |||||||  |||||||| ||||    
T  38365901 aggctttgtttgggagtttggaggggaggggaggggagagttttagaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagaggacttt 38366000  T
Q  149 gg 150  Q
    ||    
T  38366001 gg 38366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 52636631 - 52636740
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||||||||||||||||||||||||||||||||   |||  |||||       |||  |||||||||| |||||||||| ||||||  ||  |||||||    
T  52636631 ttaggctttgtttgcgagtttggaggggaagggatgggagaattttggaaaaaaggactgagcaagtggaagaaatagagtacattggaagatgagggct 52636730  T
Q  147 ttggggggtt 156  Q
    ||||||||||    
T  52636731 ttggggggtt 52636740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 17873122 - 17873169
Alignment:
Q  103 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  17873122 aaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 17873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 28880029 - 28880076
Alignment:
Q  179 attgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  28880029 attgtattgaatgaggattttggaggatttatatgaattcttcaaatt 28880076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 675241 - 675287
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  675241 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 675287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 13270475 - 13270381
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  13270475 gctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggagtagagggctttgg 13270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 31530291 - 31530254
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31530291 tctttaggctttgtttgagagtttggaggggaagggag 31530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 45899550 - 45899513
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45899550 tctttaggctttgtttgggagtttggaggggaagggag 45899513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 48417659 - 48417606
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||||| ||||||||| |||| | ||||||||||||| |||||    
T  48417659 tcaaaaattgtattggaggaggattttggagggtctatatgaattcttcaaatt 48417606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 52430765 - 52430732
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||||||||||||||||    
T  52430765 ttaggctttgtttgcgagtttggaggggaaggga 52430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 56504625 - 56504576
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  56504625 ggaaggagcaagtgcaagaaatagaagacattgggaggagagggctttgg 56504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 904122 - 904170
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  904122 gaaggagcaagtggaagaaatagaagacattcggaggagagggctttgg 904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 3127219 - 3127119
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  |||| |||||       ||||||||||| ||  ||||||||| |||||||||| | |||||||||    
T  3127219 aggctttgtttg-gagtttggaggggaggggaggggaggattttggaaaaaaggaaggagcaaatgaaagaaatagaagacattgagaagtgagggcttt 3127121  T
Q  149 gg 150  Q
    ||    
T  3127120 gg 3127119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 21081215 - 21081332
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg-----nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggaga 141  Q
    ||||||||||||||||||||||||||||||| |||  ||||| ||||            ||||||||||||||| ||||||||| |||||||||||| ||    
T  21081215 ttaggctttgtttgcgagtttggaggggaagagaggggaggggtttgaaaaaaaaagaaggaaggagcaagtggaagaaatagatgacattgagagggga 21081314  T
Q  142 gggctttggggggttcat 159  Q
      | ||||| ||||||||    
T  21081315 atgttttggagggttcat 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 3075678 - 3075639
Alignment:
Q  276 ctttcaaaaaatgtgtaagatttctcaaatttttcctata 315  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  3075678 ctttcaaaaaatgtgaaagatttctgaaatttttcctata 3075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 18964940 - 18964893
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||| ||||||||| |||||||||||||| |||||| ||||||||||    
T  18964940 tttagactttgtttgggagtttggaggggaggggagaggagggttttg 18964893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 29576348 - 29576305
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggagatgagg 87  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  29576348 tctttagactttgtttgcgagtttggaggggaatggagaggagg 29576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 38137046 - 38137011
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||| |||||||||||||||||||||||||||||||    
T  38137046 tttatgctttgtttgcgagtttggaggggaagggag 38137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 41844701 - 41844666
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41844701 tttaggctttgtttgggagtttggaggggaagggag 41844666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 47063716 - 47063767
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||| |||||    
T  47063716 aaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatt 47063767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 20534192 - 20534158
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  20534192 ttaggctttgtttgggagtttggaggggaagggag 20534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 21357978 - 21358024
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  21357978 ttaggctctgtttgagagtttggaggggaagggaggggagggttttg 21358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 22845048 - 22845082
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  22845048 ttaggctttgtttgggagtttggaggggaagggag 22845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 29114445 - 29114411
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  29114445 ttaggctttgtttgcgagtttggaagggaagggag 29114411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 46669862 - 46669816
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatta 318  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||    
T  46669862 tactctttaaaaaaatgtgaaagatttctcaattttttcctgtatta 46669816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 8828029 - 8827984
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt 92  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  8828029 ttagactttgtttgcgagtttgaaggggcagggagaggagggtttt 8827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 13985021 - 13984976
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattctt 220  Q
    ||||||||||||||| |||| |||| |||||||||||||| |||||    
T  13985021 aaaaattgtattggaggagggttttggaggatttatatgagttctt 13984976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 31340658 - 31340703
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||||||| |||||||||||||||||||   ||||||||||    
T  31340658 taggctttgtttgggagtttggaggggaagggatgggagggttttg 31340703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 31418874 - 31418829
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||||||||| |||| ||||||| |||| |||||||||||||    
T  31418874 tactctttcaaaaactgtgaaagatttatcaattttttcctatatt 31418829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 31529943 - 31529992
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||| |||||    
T  31529943 ggaaggagcaagtggaagaaatagaagacatcgggaggagagggttttgg 31529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 38366294 - 38366257
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  38366294 tctttaggctttgtttgggagtttggagaggaagggag 38366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 43793990 - 43793957
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||| ||||||||||||||||||||    
T  43793990 ttaggctttgtttacgagtttggaggggaaggga 43793957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 45022875 - 45022818
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 159  Q
    |||||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||    
T  45022875 gaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcat 45022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 48620204 - 48620256
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 154  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||||||||||    
T  48620204 ggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 48620545 - 48620512
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||||||||||| ||||    
T  48620545 ttaggctttgtttgcgagtttggaggggagggga 48620512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 51258788 - 51258735
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||||||||| ||||||||| |||||| |||||||||||  ||||||| |||||    
T  51258788 tcaaaaattgcattggatgaagattttggaggatttatacaaattcttcaaatt 51258735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 55813823 - 55813794
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaa 76  Q
    ||||||||||||||||||||||||||||||    
T  55813823 ttaggctttgtttgcgagtttggaggggaa 55813794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 6836563 - 6836607
Alignment:
Q  273 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  6836563 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 6836607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 13269877 - 13269925
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    ||||||||||||||| ||||||||| ||||| | || ||||||||||||    
T  13269877 ggaaggagcaagtggaagaaatagaagacatcgtgaagagagggctttg 13269925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 21295940 - 21295980
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  21295940 tttgtttgggagtttggaggggaagggaggttagggttttg 21295980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 27485451 - 27485419
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||| |||||||||    
T  27485451 aggctttgtttgcgagtttggagtggaagggag 27485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 31187303 - 31187202
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  || |||||||       ||||| ||||| ||| ||||||  | ||||||  ||||||||||||||    
T  31187303 aggctttgtttgggagtttggaggggacgggaggggatggttttggaaaaaaggaagaagcaactggaagaaattaaagacattaggaggagagggcttt 31187204  T
Q  149 gg 150  Q
    ||    
T  31187203 gg 31187202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 31419100 - 31419060
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  31419100 tttgtttgcgagtttggagggaaagggagccgagggttttg 31419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 32648822 - 32648866
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| | ||||||||||||||||||  ||||||||||    
T  32648822 aggctttgtttgggggtttggaggggaagggaggggagggttttg 32648866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 33500392 - 33500424
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||| ||||||||||    
T  33500392 aggctttgtttgcgagtttggaagggaagggag 33500424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 45971486 - 45971538
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg 45971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 3658722 - 3658616
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |||    
T  3658722 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaagaaggaaggagcaagtggaagaaatagaagacattgggaggagagagct 3658623  T
Q  147 ttggggg 153  Q
    |||||||    
T  3658622 ttggggg 3658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 33406841 - 33406741
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  |||||||||        ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  33406841 aggctttgtttgggagtttggaggggaggggaggggagggttttaaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 33406742  T
Q  149 g 149  Q
    |    
T  33406741 g 33406741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 38505547 - 38505436
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 144  Q
    |||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | || |||| |||||    
T  38505547 ctttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 38505448  T
Q  145 ctttggggggtt 156  Q
    ||||||||||||    
T  38505447 ctttggggggtt 38505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 23620950 - 23620901
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23620950 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 23620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 33113798 - 33113749
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33113798 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 34652208 - 34652159
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34652208 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 19644323 - 19644367
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 217  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  19644323 tcaaaaattgtattggatgagggttttggaggatttatatgaatt 19644367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 36747165 - 36747270
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 144  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||| |        |||||||||||||| ||||||||| |||||||  |||||||||    
T  36747165 tttaggctttgtttgagagtttggaggggaggggaggggagggttttggaaaaaaatgaaggagcaagtggaagaaatagaagacattggaaggagaggg 36747264  T
Q  145 ctttgg 150  Q
     |||||    
T  36747265 ttttgg 36747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 7667376 - 7667272
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||| |        ||| |||||||||| ||||||||| ||||||| |||||||| ||    
T  7667376 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaatagaatgagcaagtggaagaaatagaagacattgggaggagagagc 7667277  T
Q  146 tttgg 150  Q
    |||||    
T  7667276 tttgg 7667272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 5968253 - 5968151
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| ||||||| | |||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||| || |||    
T  5968253 ttaggctttgtttgggagtttgaaagggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggaaagcgct 5968155  T
Q  147 ttgg 150  Q
    ||||    
T  5968154 ttgg 5968151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 28437699 - 28437650
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28437699 ggaaggagcaagtggaagaaataaaagacattgggaggagagggctttgg 28437650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 42620508 - 42620459
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  42620508 ggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg 42620459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 1277802 - 1277846
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 91  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||    
T  1277802 ttaggttttgtttgcgagtttgaaggggaagggaggtgagggttt 1277846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 4058348 - 4058316
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||    
T  4058348 aggctttgtttgcgagtttggaggggaagggag 4058316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 16805776 - 16805744
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||    
T  16805776 aggctttgtttgcgagtttggaggggaagggag 16805744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 46612011 - 46611967
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 91  Q
    |||||||||||||||||||||||||||||| |||  |||||||||    
T  46612011 ttaggctttgtttgcgagtttggaggggaaaggaagtgagggttt 46611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 34651868 - 34651903
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34651868 tttaggctttgtttgggagtttggaggggaagggag 34651903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 30081236 - 30081270
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  30081236 ttaggctttgtttgtgagtttggaggggaagggag 30081270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 33113458 - 33113492
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||| |||||||||||||||||||    
T  33113458 tttaggctttgtttgggagtttggaggggaaggga 33113492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 38137821 - 38137851
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||    
T  38137821 taggctttgtttgcgagtttggaggggaagg 38137851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 38505390 - 38505340
Alignment:
Q  176 aaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 38505340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 4787920 - 4787875
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||    
T  4787920 tactctttcaaaaaatgtgaaaaatttctcaatttttccctatatt 4787875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 17884393 - 17884364
Alignment:
Q  46 tttaggctttgtttgcgagtttggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  17884393 tttaggctttgtttgcgagtttggagggga 17884364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 19644225 - 19644274
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  19644225 ggaaggagcaagtggaagaaatacaagacattgagatgagagagctttgg 19644274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 22556622 - 22556577
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||||    
T  22556622 tactcttttaaaaaatgtgaaagatttctcaatttttccctatatt 22556577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 32228931 - 32228976
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  32228931 tactctttcaaaaaatgtgaaagatttctcattttttttctatatt 32228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 33188057 - 33188024
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||| ||||||    
T  33188057 ctttaggctttgtttgcgagtttggagaggaagg 33188024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 33871776 - 33871809
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||||||||||| ||||    
T  33871776 ttaggctttgtttgcgagtttggaggggagggga 33871809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 36747560 - 36747519
Alignment:
Q  52 ctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  36747560 ctttgtttgagagtttggaggggaagggaaaggagggttttg 36747519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 40985317 - 40985272
Alignment:
Q  272 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||    
T  40985317 tactctttcaaaaaatgtgaaatatttctctattttttcctatatt 40985272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 7666982 - 7667014
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  7666982 aggctttgtttgggagtttggaggggaagggag 7667014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 15749154 - 15749126
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||    
T  15749154 tttgtttgcgagtttggaggggaagggag 15749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 19791563 - 19791591
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||    
T  19791563 tttgtttgcgagtttggaggggaagggag 19791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 28437359 - 28437391
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  28437359 aggctttgtttgagagtttggaggggaagggag 28437391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 33872263 - 33872231
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||| |||||    
T  33872263 aggctttgtttgcgagtttggaggggaggggag 33872231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 38236055 - 38236023
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  38236055 aggctttgtttgggagtttggaggggaagggag 38236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 38679904 - 38679864
Alignment:
Q  276 ctttcaaaaaatgtgtaagatttctcaaatttttcctatat 316  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  38679904 ctttcaaaaaatgtgaaagatttatcaaattttccctatat 38679864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 41471377 - 41471409
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||| ||||||||    
T  41471377 aggctttgtttgcgagtttggaggagaagggag 41471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 42382958 - 42382926
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||| |||||||||||||||||||||||||||    
T  42382958 aggctctgtttgcgagtttggaggggaagggag 42382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 42854116 - 42854152
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||| || |||||||||||||||||    
T  42854116 ctttaggctttgtttgtgaatttggaggggaagggag 42854152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 43189120 - 43189076
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  43189120 aggctttgtttgggagtttggatgggaagggagaggagggctttg 43189076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 46442581 - 46442613
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||| ||||||||||||||||||||||||    
T  46442581 aggctttggttgcgagtttggaggggaagggag 46442613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 46745780 - 46745692
Alignment:
Q  64 gtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    |||||||||||| |||||  ||||||||||       ||||||||||||||| | ||||||| |||| ||||||| |||| |||||||||    
T  46745780 gtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaaaaaatagaagaca-tgagaggggaggactttggggg 46745692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 35700932 - 35701033
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||  ||||||||| ||||||| ||||||||||||||    
T  35700932 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaggagagggcttt 35701031  T
Q  149 gg 150  Q
    ||    
T  35701032 gg 35701033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 35704583 - 35704681
Alignment:
Q  50 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||       ||||||| ||||||| ||||||||||||||||| |||  |||||||||    
T  35704583 ggctttgtttgcaagtttggagaggaagggaggggagggttttgggaaaaaggaaggaacaagtggaagaaatagaggacattgggagaggagggcttt 35704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 38302510 - 38302461
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38302510 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 38302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 10437857 - 10437965
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    ||||||||||||||||||||||||||||||||||| || || || |       |||| |||||||||| |||||||||| | | || |||| |||| |||    
T  10437857 taggctttgtttgcgagtttggaggggaagggagaggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggaggtctt 10437956  T
Q  148 tggggggtt 156  Q
    |||||||||    
T  10437957 tggggggtt 10437965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 10295354 - 10295456
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaaggga-gatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    |||||||| ||| ||||||| |||||| |||| || ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  10295354 aggctttgattgggagtttgaaggggaggggatgaggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagatggctt 10295453  T
Q  148 tgg 150  Q
    |||    
T  10295454 tgg 10295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 27480375 - 27480278
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||| ||||||| ||||||  ||||  ||||||||||       ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27480375 tttgtttgggagtttgaaggggagaggaggggagggttttggaaaaaaggaagaagcaagtggaagaaatagaagacattgggaggagagggctttgg 27480278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 4649139 - 4649096
Alignment:
Q  106 gagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  4649139 gagcaagtggaagaaatagaagacattgagaggagagggctttg 4649096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 32125320 - 32125269
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattcttcaaatt 32125269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 35708962 - 35708855
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg-nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    |||||||||||| ||||||||||||||||||||  |||||||| |        |||||||| |||||| |||||| ||||||||||  ||||| ||||||    
T  35708962 aggctttgtttgtgagtttggaggggaagggaggggagggtttggaaaaaaaaggaaggagtaagtggaagaaattgaggacattggaaggag-gggctt 35708864  T
Q  148 tggggggtt 156  Q
    |||||||||    
T  35708863 tggggggtt 35708855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 1935275 - 1935241
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  1935275 ttaggctttgtttgcgagtttggaggggaagggag 1935241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 1658101 - 1658150
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  1658101 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 1658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 9096341 - 9096394
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||| |||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  9096341 tcaacaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 9096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 13569260 - 13569293
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||||||||||    
T  13569260 taggctttgtttgcgagtttggaggggaagggag 13569293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 26149527 - 26149576
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  26149527 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 26149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 5772545 - 5772577
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||||||||||||    
T  5772545 tttaggctttgtttgcgagtttggaggggaagg 5772577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 6491086 - 6491118
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||    
T  6491086 aggctttgtttgcgagtttggaggggaagggag 6491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 32824531 - 32824567
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32824531 ctttaggctttgtttgcgagtttggaggagaagggag 32824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 3676562 - 3676511
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||| |||||||||  ||| ||||||||||||||| |||||    
T  3676562 aaaaattgtattggaggaggattttgaagggtttatatgaattcttcaaatt 3676511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 9096195 - 9096226
Alignment:
Q  50 ggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||||||||    
T  9096195 ggctttgtttgcgagtttggaggggaagggag 9096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 18670902 - 18670937
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18670902 tttaggctttgtttgtgagtttggaggggaagggag 18670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 19389875 - 19389824
Alignment:
Q  175 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||||| ||||||||| |||| |||| |||||||||| |||||    
T  19389875 aaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatt 19389824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 6816258 - 6816296
Alignment:
Q  103 aaggagcaagtgggagaaatagaggacattgagaggaga 141  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  6816258 aaggagcaagtggaagaaatagatgacattgagaggaga 6816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 10295751 - 10295717
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  10295751 ttaggctttgtttgggagtttggaggggaagggag 10295717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 10842922 - 10842956
Alignment:
Q  44 tctttaggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||| |||||    
T  10842922 tctttaggctttgtttgcgagtttggaggagaagg 10842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 17093162 - 17093128
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  17093162 ttaggctttgtttgggagtttggaggggaagggag 17093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 25598585 - 25598619
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  25598585 ttaggctttgtttgggagtttggaggggaagggag 25598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 35683682 - 35683575
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||||||||||| ||||||||||||  || ||||| |       |||| |||||||||| ||||||||| || | || |||  ||||||||     
T  35683682 aggctttgtttgcgagtttgaaggggaagggaggggaaggtttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggcttc 35683583  T
Q  149 ggggggtt 156  Q
    ||||||||    
T  35683582 ggggggtt 35683575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 38120011 - 38120045
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  38120011 ttaggctttgtttgggagtttggaggggaagggag 38120045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 39649440 - 39649474
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||| |||||||    
T  39649440 ttaggctttgtttgcgagtttggagggcaagggag 39649474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 2020905 - 2020954
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||  ||||||| |||||||| |||||||    
T  2020905 ggaaggagcaagtggaagaaatagtagacattgggaggagagagctttgg 2020954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 6491476 - 6491427
Alignment:
Q  104 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 153  Q
    |||||||||||| ||||||||| || ||||  ||||||||||||||||||    
T  6491476 aggagcaagtggaagaaatagaagaaattggtaggagagggctttggggg 6491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 6620504 - 6620471
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||| ||||||||||||    
T  6620504 ttaggctttgtttgcgagttttgaggggaaggga 6620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 9684607 - 9684640
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    |||||||||||||| |||||||||||||||||||    
T  9684607 ttaggctttgtttgggagtttggaggggaaggga 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 13450508 - 13450557
Alignment:
Q  180 ttgtattggatgaggattttagaggatttatatgaattctt-aaaattaa 228  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  13450508 ttgtattggaggaggattttggaggatttatatgaactcttcaaaattaa 13450557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 35683290 - 35683319
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaag 77  Q
    ||||||||||||||||||||||||||||||    
T  35683290 taggctttgtttgcgagtttggaggggaag 35683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 37909023 - 37909076
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    |||||| |||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  37909023 tcaaaagttgtattggaggagggttttggagggtttatatgaattcttcaaatt 37909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 1658439 - 1658395
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||    
T  1658439 aggctttgtttgagagtttgaaggggaagggaggggagggttttg 1658395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 10376994 - 10377026
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  10376994 tttaggctttgtttgcgagttttgaggggaagg 10377026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 13449865 - 13449897
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattg 133  Q
    |||||||||||||||||||||| ||||||||||    
T  13449865 ggaaggagcaagtgggagaaattgaggacattg 13449897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 17092823 - 17092871
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||||||| ||| ||||| |||||||  |||||||||||||||    
T  17092823 gaaggagcaagtggaagatatagaagacattggaaggagagggctttgg 17092871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 21571929 - 21571961
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  21571929 tttaggctttgtttgcgagttttgaggggaagg 21571961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 33718445 - 33718413
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||| |||||||||||||||||||    
T  33718445 taggctttgtttgggagtttggaggggaaggga 33718413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 35704780 - 35704820
Alignment:
Q  277 tttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||||||||| |||||||||| | |||||||||||||    
T  35704780 tttcaaaaaatgtgaaagatttctctattttttcctatatt 35704820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 43496379 - 43496407
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||||||    
T  43496379 aggctttgtttgcgagtttggaggggaag 43496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 34272384 - 34272488
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    |||||||||||||| ||||||| ||||||||||||  |||| |||||        ||||||||||||||| ||||||||| |||||||||||||||||||    
T  34272384 ttaggctttgtttgggagtttgaaggggaagggaggggaggattttggaaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagggc 34272483  T
Q  146 tttgg 150  Q
    |||||    
T  34272484 tttgg 34272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 3404782 - 3404681
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||  ||||||| ||||||    
T  3404782 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattaggaggagaaggcttt 3404683  T
Q  149 gg 150  Q
    ||    
T  3404682 gg 3404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 1942241 - 1942141
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||  ||||||||||||||||||||  ||||||||||       ||||||| ||||||| ||||||||| ||||||| ||||||||||||||    
T  1942241 aggctttgtttaggagtttggaggggaagggaggggagggttttgaaaaaa-ggaaggatcaagtggaagaaatagaagacattgggaggagagggcttt 1942143  T
Q  149 gg 150  Q
    ||    
T  1942142 gg 1942141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 37659743 - 37659639
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 145  Q
    |||||| |||||||| ||||||| ||||||||||||  ||||||||||       ||||||||  ||||| ||||||||| ||||||| |||||||||||    
T  37659743 tttaggttttgtttgggagtttgaaggggaagggaggggagggttttggaaaaaaggaaggagtgagtggaagaaatagaagacattgggaggagagggc 37659644  T
Q  146 tttgg 150  Q
    |||||    
T  37659643 tttgg 37659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 36906062 - 36906160
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  36906062 ttaggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 36906156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 6691 - 6791
Alignment:
Q  50 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    ||||||||||| |||||||||||  | |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  6691 ggctttgtttgggagtttggaggataggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagagctttg 6790  T
Q  150 g 150  Q
    |    
T  6791 g 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 79823 - 79715
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatg-agggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 147  Q
    |||||||||||||||||||||||||||||||||  | ||| ||  |       |||| |||||||||| |||||||||||| | || |||| ||||||||    
T  79823 aggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctt 79724  T
Q  148 tggggggtt 156  Q
    |||||||||    
T  79723 tggggggtt 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 39193855 - 39193910
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 156  Q
    ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  39193855 ggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 39193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 21262786 - 21262740
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  21262786 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 21262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 1839636 - 1839669
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggga 80  Q
    ||||||||||||||||||||||||||||||||||    
T  1839636 ttaggctttgtttgcgagtttggaggggaaggga 1839669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 4734653 - 4734604
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  4734653 ggaaggagcaagtggaagaaatagaagacattgggaggagagggttttgg 4734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 1941864 - 1941900
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1941864 ctttaggctttgtttgggagtttggaggggaagggag 1941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 23932767 - 23932735
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaaggga 80  Q
    |||||||||||||||||||||||||||||||||    
T  23932767 taggctttgtttgcgagtttggaggggaaggga 23932735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 34148398 - 34148442
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  34148398 aggctttgtttgggagtttggaggggaagggaggggagggttttg 34148442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 34304640 - 34304688
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  34304640 ggaaggagcaagtggaagaaatagaagacattaagatgagagggctttg 34304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 42651519 - 42651563
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  42651519 aggctttgtttgcgagtttgtagggaaagagagatgagggttttg 42651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 26772852 - 26772817
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggaga 82  Q
    ||||||||||||||||||||||||||| ||||||||    
T  26772852 ttaggctttgtttgcgagtttggagggaaagggaga 26772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 31297503 - 31297456
Alignment:
Q  102 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  31297503 gaaggagcaagtggaagaaatagaagacattgggaggagatggctttg 31297456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 35376839 - 35376727
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    ||||||||| ||||||||||  ||||| | |||||  |||||||||        ||||| |||||||||  |||||| |||||||||| ||| ||| |||    
T  35376839 ttaggctttctttgcgagttcagagggtaggggaggggagggttttaggaaaaaggaagaagcaagtggacgaaataaaggacattgaaaggggagagct 35376740  T
Q  147 ttggggggttcat 159  Q
    |||||||||||||    
T  35376739 ttggggggttcat 35376727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 3635683 - 3635641
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggagatgagggttttg 93  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  3635683 gctttgtttgcgagtttggaggggaagggatgagagggttttg 3635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 13258593 - 13258676
Alignment:
Q  217 tcttaaaattaaaac-atactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttc 299  Q
    ||||||||||||||  ||| |||| | ||| ||||||||||||||||||       ||||||||||||||||||| ||||||||    
T  13258593 tcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 27085218 - 27085248
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||||||||    
T  27085218 ttaggctttgtttgcgagtttggaggggaag 27085248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 31149799 - 31149874
Alignment:
Q  52 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagagg 127  Q
    ||||||||||||||||||||||||||||||  ||| ||||||        ||| |||||||||| |||||||||||    
T  31149799 ctttgtttgcgagtttggaggggaagggagtggagtgttttggaaaacatgaatgagcaagtggaagaaatagagg 31149874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 1840028 - 1839999
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  1840028 aggctttgtttgcgagtttggaggggaagg 1839999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 1840362 - 1840309
Alignment:
Q  101 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 154  Q
    ||||||||||||||| |||||| |||||||||  |||  |||||||||||||||    
T  1840362 ggaaggagcaagtggaagaaattgaggacattcggagaggagggctttgggggg 1840309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 10605206 - 10605153
Alignment:
Q  173 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||| |||||||||||||||| |||| |||  ||||||||||||||| |||||    
T  10605206 tcaaatattgtattggatgagggttttcgagagtttatatgaattctttaaatt 10605153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 40677065 - 40677032
Alignment:
Q  53 tttgtttgcgagtttggaggggaagggagatgag 86  Q
    |||||||||||||||||| |||||||||||||||    
T  40677065 tttgtttgcgagtttggaagggaagggagatgag 40677032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 41866329 - 41866296
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||||| |||||||||    
T  41866329 ctttaggctttgtttgcgagtttgaaggggaagg 41866296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 1111337 - 1111305
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaaggg 79  Q
    ||||||||||||||||||||||||||| |||||    
T  1111337 ttaggctttgtttgcgagtttggagggaaaggg 1111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 9309758 - 9309722
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagggaga 82  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  9309758 tttaggctttgtttgtgagtttcgaggggaagggaga 9309722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 12319151 - 12319123
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaag 77  Q
    |||||||||||||||||||||||||||||    
T  12319151 aggctttgtttgcgagtttggaggggaag 12319123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 13406299 - 13406343
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 91  Q
    |||||||||||||||| |||||||||| |||||||  ||||||||    
T  13406299 ttaggctttgtttgcgtgtttggagggaaagggaggggagggttt 13406343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 16424171 - 16424223
Alignment:
Q  175 aaaaattgtattggatgaggatttt-agaggatttatatgaattcttaaaatt 226  Q
    |||||||||||| || ||||||||| ||||| ||||||||||||||| |||||    
T  16424171 aaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatt 16424223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 21174066 - 21174034
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||| |||||||||    
T  21174066 aggctttgtttgcgagtttggagtggaagggag 21174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 29611921 - 29611965
Alignment:
Q  106 gagcaagtgggagaaatagaggacattgagaggagagggctttgg 150  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  29611921 gagcaagtggaagaaatataagacattgggaggagagggctttgg 29611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 31305829 - 31305781
Alignment:
Q  178 aattgtattggatgaggattttagaggatttatatgaattcttaaaatt 226  Q
    ||||||||||||  |||||||| |||| ||||||||||||||| |||||    
T  31305829 aattgtattggagaaggattttggagggtttatatgaattcttcaaatt 31305781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 33230864 - 33230896
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  33230864 aggctttgtttgggagtttggaggggaagggag 33230896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 36906452 - 36906420
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||| ||||||||||||||||||||    
T  36906452 aggctttgtttgggagtttggaggggaagggag 36906420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 1931 - 2034
Alignment:
Q  50 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 149  Q
    |||||||||||||||||||||||||||||||   || |  ||||       ||||||||||||||| ||||||||| || | || |||| ||||||||||    
T  1931 ggctttgtttgcgagtttggaggggaagggaagggaagactttgaaaaaaaggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttg 2030  T
Q  150 gggg 153  Q
    ||||    
T  2031 gggg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 6969 - 6935
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  6969 ttaggctttgtttgcgagtttggaggggaagggag 6935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 7952 - 7918
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||||||    
T  7952 ttaggctttgtttgcgagtttggaggggaagggag 7918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 82666 - 82775
Alignment:
Q  48 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 146  Q
    |||||||| |||| |||||||||||| |||||||  ||||| ||||        ||||||||||||||| ||||||||| ||| ||||||| | ||||||    
T  82666 taggctttctttgtgagtttggagggtaagggaggggagggctttggaaaaaaaggaaggagcaagtggaagaaatagatgactttgagagaaaagggct 82765  T
Q  147 ttggggggtt 156  Q
    || |||||||    
T  82766 ttcgggggtt 82775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 1844 - 1810
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  1844 ttaggctttgtttgagagtttggaggggaagggag 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 403 - 373
Alignment:
Q  51 gctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||||||||||||||||||||    
T  403 gctttgtttgcgagtttggaggggaagggag 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 35271 - 35305
Alignment:
Q  47 ttaggctttgtttgcgagtttggaggggaagggag 81  Q
    |||||||||||||| ||||||||||||||||||||    
T  35271 ttaggctttgtttgggagtttggaggggaagggag 35305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 35663 - 35562
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 148  Q
    |||||||||||| | |||||||| ||| | |||  ||||||||||       ||||||||||||||  ||||||||| ||||||| || ||||| |||||    
T  35663 aggctttgtttgggtgtttggagaggaggcgaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaagagagagcttt 35564  T
Q  149 gg 150  Q
    ||    
T  35563 gg 35562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 6940 - 6969
Alignment:
Q  52 ctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||||||||||||||||||    
T  6940 ctttgtttgcgagtttggaggggaagggag 6969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 93309 - 93342
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||| |||||||||||||||||    
T  93309 ctttaggctttgtttgggagtttggaggggaagg 93342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 93705 - 93676
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagg 78  Q
    ||||||||||||||||||||||||||||||    
T  93705 aggctttgtttgcgagtttggaggggaagg 93676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 8979 - 9023
Alignment:
Q  273 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 317  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  8979 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 9023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 2231 - 2199
Alignment:
Q  49 aggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||| |||||||||||||||||||    
T  2231 aggctttgtttgcaagtttggaggggaagggag 2199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 26247 - 26283
Alignment:
Q  45 ctttaggctttgtttgcgagtttggaggggaagggag 81  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  26247 ctttaggctttgtttacgagtttgaaggggaagggag 26283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 46555 - 46587
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  46555 tttaggctttgtttgcgagttttgaggggaagg 46587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 152232 - 152200
Alignment:
Q  46 tttaggctttgtttgcgagtttggaggggaagg 78  Q
    |||||||||||||||||||||| ||||||||||    
T  152232 tttaggctttgtttgcgagttttgaggggaagg 152200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University