View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_high_17 (Length: 338)

Name: NF18890_high_17
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_high_17
NF18890_high_17
[»] chr6 (4 HSPs)
chr6 (12-327)||(5982907-5983222)
chr6 (59-305)||(5961505-5961751)
chr6 (59-303)||(5967017-5967261)
chr6 (59-304)||(5932620-5932865)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 5983222 - 5982907
Alignment:
Q  12 atcatcatgccagtgttaccgattacaatacatatctggaccgatatttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagat 111  Q
    |||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5983222 atcagcataccagtgttaccgattacaatacatatctccaccgatatttttccgtatttcccaaaggcatcccccataagacttccataggaagaaagat 5983123  T
Q  112 tccctgccttcgaaaacctgatcacaaactcaattgacttctctgttagtaatgctgtgaggattatggcaagaagaccaggtaccatccccaacttttt 211  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5983122 tccctgccctcgaaaacctaatcacaaactcaattgacttttctgttagtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttct 5983023  T
Q  212 gacacaagcaggcaagcccatgattccggcaccaatgactgtggttgacaaattgaaaacagctccagaaaatggagctccattaaattcatgataacca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||    
T  5983022 gacacaagcaggcaagcccatgattccggcaccaatgactgtggttgacaaattgaaaacagctcctgaaaatgaagctctattaaattcatgataatca 5982923  T
Q  312 acatttgtttcttgtg 327  Q
    ||||||||||||||||    
T  5982922 acatttgtttcttgtg 5982907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 59 - 305
Target Start/End: Complemental strand, 5961751 - 5961505
Alignment:
Q  59 ttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctgtt 158  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||  |||||||||||||||  |||||||||| |||||||||     
T  5961751 ttttccgtatttcccaaaggtatctcccataagacttccataggaagaaagattccctgctctcgaaaacctgatcatgaactcaattgccttctctgtc 5961652  T
Q  159 agtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttttgacacaagcaggcaagcccatgattccggcaccaatgactgtggttg 258  Q
    | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||||| |||||||| |    
T  5961651 aataatgctgttaggattatggcaagaagaccaggtaccattcccaactttttgacgcaagcgggcaagcccatgatcccagcaccaataactgtggtgg 5961552  T
Q  259 acaaattgaaaacagctccagaaaatggagctccattaaattcatga 305  Q
    |||||||||||||||| |||| ||||| ||||||||| |||||||||    
T  5961551 acaaattgaaaacagccccaggaaatgaagctccattgaattcatga 5961505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 5967261 - 5967017
Alignment:
Q  59 ttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctgtt 158  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||| |  || |||||||||||||||||     
T  5967261 ttttccgtatttcccataggcatctcccataagatttccataggaagaaagtttccctgccctagaaaacctgattatgaaatcaattgacttctctgtc 5967162  T
Q  159 agtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttttgacacaagcaggcaagcccatgattccggcaccaatgactgtggttg 258  Q
    | ||| ||||| |||| |||| ||| ||||||||| |||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||| | ||||||||    
T  5967161 aataaagctgttaggactatgacaataagaccaggcaccatccctaactttttcacacatgcaggcaatcccataattccagcaccaataattgtggttg 5967062  T
Q  259 acaaattgaaaacagctccagaaaatggagctccattaaattcat 303  Q
    | |||||||||||||| |||||||||| |||||||||||||||||    
T  5967061 ataaattgaaaacagcaccagaaaatgaagctccattaaattcat 5967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 5932865 - 5932620
Alignment:
Q  59 ttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctgtt 158  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||||| ||  || |||| ||||||||||||     
T  5932865 ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc 5932766  T
Q  159 agtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttttgacacaagcaggcaagcccatgattccggcaccaatgactgtggttg 258  Q
    |  |||||||| |||| ||| |||| ||||||||| ||||| |||||||| || ||||||||||||||||||||||| || ||||| || ||||| || |    
T  5932765 aaaaatgctgttaggactatagcaataagaccaggcaccatgcccaacttcttcacacaagcaggcaagcccatgatcccagcaccgataactgttgtcg 5932666  T
Q  259 acaaattgaaaacagctccagaaaatggagctccattaaattcatg 304  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  5932665 ataaattgaaaacagctccagaaaatgaagctccattaaattcatg 5932620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University