View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_high_21 (Length: 262)
Name: NF18890_high_21
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8963932 - 8963687
Alignment:
| Q |
1 |
cattatagaggcccagcacctcctgcatctctatagaccaactctactcagccctgattggtgttcaccactccactgcctttctgaatcacactaacca |
100 |
Q |
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| T |
8963932 |
cattatagaggcccaacacctcctacatctctatagaccaactctactcagccctgattggtgttcaccactcaactgcctttctgaatcacactaacca |
8963833 |
T |
|
| Q |
101 |
tcttccaatcttctaataaatgggcagctctttccaacatcatggagcactatgtaaccaagatggtatgctattctctaatcttgtttgattaacttaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8963832 |
tcttccaatcttctaataaatgagcagctctttccaacatcatggagcactatgtaaccaagatggtatgctattctctaatcttgtttgattaacttaa |
8963733 |
T |
|
| Q |
201 |
caatttgttttggagtgtgtttagtactaacttcttttttcttcac |
246 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8963732 |
caatttgttttggagtgtgtttagtactaacctcttttttcttcac |
8963687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 8994574 - 8994364
Alignment:
| Q |
37 |
accaactctactcagccctgattggt-gttcaccactccactgccttt------ctgaatcacactaaccatcttccaatcttctaataaatgggcagct |
129 |
Q |
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| T |
8994574 |
accaactatactcagccctgattgattgttcaccactccactacgtttacctgcctggatcacattagccatcttccaatcttcgaataactag-cagct |
8994476 |
T |
|
| Q |
130 |
ctttccaacatcatggagcactatgtaaccaagatggtatgctattctctaatcttgtttgattaacttaacaatttgttttggagtgtgtttagtacta |
229 |
Q |
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| T |
8994475 |
ctttctaaaatcatggagcactgtttaacaaagatggtatgctattctctaatcttgtttgattaacttaacaatttgtttcggagcatgcttattacta |
8994376 |
T |
|
| Q |
230 |
acttcttttttc |
241 |
Q |
| |
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|| | ||||||| |
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| T |
8994375 |
accttttttttc |
8994364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 9019021 - 9018811
Alignment:
| Q |
37 |
accaactctactcagccctgattggt-gttcaccactccactgccttt------ctgaatcacactaaccatcttccaatcttctaataaatgggcagct |
129 |
Q |
| |
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||||||| |||||||||||||||| | ||||||||||||||| | ||| ||| |||||| || |||||||||||||||| ||||| | | ||||| |
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| T |
9019021 |
accaactatactcagccctgattgattgttcaccactccactacgtttacctgcctggatcacattagccatcttccaatcttcgaataactag-cagct |
9018923 |
T |
|
| Q |
130 |
ctttccaacatcatggagcactatgtaaccaagatggtatgctattctctaatcttgtttgattaacttaacaatttgttttggagtgtgtttagtacta |
229 |
Q |
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||||| || ||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||| |
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| T |
9018922 |
ctttctaaaatcatggagcactgtttaacaaagatggtatgctattctctaatcttgtttgattaacttaacaatttgtttcggagcatgcttattacta |
9018823 |
T |
|
| Q |
230 |
acttcttttttc |
241 |
Q |
| |
|
|| | ||||||| |
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|
| T |
9018822 |
accttttttttc |
9018811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 8984613 - 8984498
Alignment:
| Q |
97 |
accatcttccaatcttctaataaatgggcagctctttccaacatcatggagcactatgtaaccaagatggtatgctattct-ctaatcttgtttgattaa |
195 |
Q |
| |
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||||||||||||| || ||| ||||||||||| |||| || ||||||| ||| | |||||| ||||||||||| || | |||||||||||||||||| |
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| T |
8984613 |
accatcttccaatttttgaattaatgggcagctttttcaaaaatcatggggcattgtgtaac---gatggtatgctcttgtactaatcttgtttgattaa |
8984517 |
T |
|
| Q |
196 |
cttaacaatttgttttgga |
214 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
8984516 |
cttaacaatttgttttgga |
8984498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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