View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_high_4 (Length: 622)
Name: NF18890_high_4
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 615
Target Start/End: Complemental strand, 8964505 - 8963901
Alignment:
| Q |
17 |
cataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964505 |
cataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaat |
8964406 |
T |
|
| Q |
117 |
gtattcttccaaggtgcacataaagattaaactcatatagtacttacattattccaaaacttgnnnnnnn--accattaaccaccactaaccatgcattt |
214 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
8964405 |
gtcttcttccaaggtgcacatcaagattaaactcaaatagtacttacattattccaatacttgtttttttttaccattaaccaccactaaccatgcattt |
8964306 |
T |
|
| Q |
215 |
ggatttcaaccatagtaacctt------atcctttaagaaattttattatttttatatcannnnnnnnnggaacaaacttataacatttcattagaaatc |
308 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
8964305 |
ggatttgaaccatagtaaccttgtccttatcctttaagaaattttattatttttatattattttttt--ggaacaaacttataacatttcattagaaatc |
8964208 |
T |
|
| Q |
309 |
aaggtataactatatgacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcga |
408 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| || |||| |
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| T |
8964207 |
aaggtataactacatgatggtgcatcaataaacaagtgggagctagcataaaatgacgatattttattcaagtctgagcgacctagtgacttgccttcga |
8964108 |
T |
|
| Q |
409 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| || |
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| T |
8964107 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaattcaataatatctctagtcctttcacgaa |
8964008 |
T |
|
| Q |
509 |
aataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcccagcacctcctt |
608 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8964007 |
aataatctataatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcccaacacctccta |
8963908 |
T |
|
| Q |
609 |
catctct |
615 |
Q |
| |
|
||||||| |
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| T |
8963907 |
catctct |
8963901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 225 - 596
Target Start/End: Complemental strand, 8995116 - 8994746
Alignment:
| Q |
225 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
323 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||| | || | |||||| |||||||||||||||||||||||||| || || || |
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| T |
8995116 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
8995017 |
T |
|
| Q |
324 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
423 |
Q |
| |
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|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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| T |
8995016 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
8994918 |
T |
|
| Q |
424 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaaaataatctacaatct |
523 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || | || ||| || | | ||||| ||||||||||||||||| |
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|
| T |
8994917 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactacc-aattcaatgatgtctttgcttccttcacgaaaataatctacaatct |
8994819 |
T |
|
| Q |
524 |
ttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcc |
596 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||| |||| ||||||| |||| | |||| ||||||||||||||| |
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|
| T |
8994818 |
tttttgagtcgagagagaaatccatattatccagttgaaggtcaaccacttaaatcaaagcattatagaggcc |
8994746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 225 - 596
Target Start/End: Complemental strand, 9019563 - 9019193
Alignment:
| Q |
225 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
323 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| | || | |||||| |||||||||||||||||||||||||| || || || |
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| T |
9019563 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
9019464 |
T |
|
| Q |
324 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
423 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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|
| T |
9019463 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
9019365 |
T |
|
| Q |
424 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaaaataatctacaatct |
523 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || | || ||| || | | ||||| ||||||||||||||||| |
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|
| T |
9019364 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactacc-aattcaatgatgtctttgcttccttcacgaaaataatctacaatct |
9019266 |
T |
|
| Q |
524 |
ttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcc |
596 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||| |||| ||||||| |||| | |||| ||||||||||||||| |
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| T |
9019265 |
tttttgagtcgagagagaaatccatattatccagttgaaggtcaaccacttaaatcaaagcattatagaggcc |
9019193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 8955880 - 8956012
Alignment:
| Q |
17 |
cataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8955880 |
cataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatttgccaccatattttttccagcaaagtgcactagtaat |
8955979 |
T |
|
| Q |
117 |
gtattcttccaaggtgcacataaagattaaact |
149 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |
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|
| T |
8955980 |
gtattcttccaaggtgcacatcaagatttaact |
8956012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 409 - 606
Target Start/End: Complemental strand, 8991389 - 8991192
Alignment:
| Q |
409 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaa |
508 |
Q |
| |
|
||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| |||||| || |||| || |
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|
| T |
8991389 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctctcttcaagaa |
8991290 |
T |
|
| Q |
509 |
aataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcccagcacctcc |
606 |
Q |
| |
|
|||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||||||||||||||||| ||||||| |
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|
| T |
8991289 |
aataatctacaacctttttttagtcgagagtaaaatccatattatctagttgaaggtcaactaccgagaccagagcattatagaggcccgacacctcc |
8991192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 409 - 606
Target Start/End: Complemental strand, 9015836 - 9015639
Alignment:
| Q |
409 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaa |
508 |
Q |
| |
|
||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| |||||| || |||| || |
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|
| T |
9015836 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctctcttcaagaa |
9015737 |
T |
|
| Q |
509 |
aataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagcattatagaggcccagcacctcc |
606 |
Q |
| |
|
|||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
9015736 |
aataatctacaacctttttttagtcgagagtaaaatccatattatctagttgaaggtcaactaccgagaccagagcattatagaggcccgacacctcc |
9015639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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