View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18890_high_5 (Length: 568)
Name: NF18890_high_5
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 17753965 - 17754522
Alignment:
| Q |
1 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753965 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
17754064 |
T |
|
| Q |
101 |
atatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgag |
200 |
Q |
| |
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||||||| |||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754065 |
atatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgag |
17754164 |
T |
|
| Q |
201 |
gacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754165 |
gacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatg |
17754264 |
T |
|
| Q |
301 |
ttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggaca |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17754265 |
ttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataactctggatcaccattttcggaagaagtggtagcaaatggaca |
17754364 |
T |
|
| Q |
401 |
tacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaa |
500 |
Q |
| |
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|| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754365 |
tatgatgagtcgtgcctcaagtccagttgaaggtaatgtcacgcgatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaa |
17754464 |
T |
|
| Q |
501 |
actgtactattgaataagtttgtgaggccttcgtatgagtgttggtttcttccctatg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17754465 |
actgtactattgaataagtttgtgaggccttcgtatgagtgtaggtttcttccctatg |
17754522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 17762952 - 17763509
Alignment:
| Q |
1 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17762952 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
17763051 |
T |
|
| Q |
101 |
atatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgag |
200 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763052 |
atatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgag |
17763151 |
T |
|
| Q |
201 |
gacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763152 |
gacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatg |
17763251 |
T |
|
| Q |
301 |
ttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggaca |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763252 |
ttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataactctggatcaccattttcggaagaagtggtagcaaatggaca |
17763351 |
T |
|
| Q |
401 |
tacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaa |
500 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763352 |
tatgatgagtcgtgcctcaagtccagttgaaggtaatgtcacgcgatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaa |
17763451 |
T |
|
| Q |
501 |
actgtactattgaataagtttgtgaggccttcgtatgagtgttggtttcttccctatg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17763452 |
actgtactattgaataagtttgtgaggccttcgtatgagtgtaggtttcttccctatg |
17763509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 15735916 - 15736446
Alignment:
| Q |
1 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
15735916 |
tttgctcctgatttcaaagagatcgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaatactgagactgataaggtatgtgaacgtt |
15736015 |
T |
|
| Q |
101 |
atatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgag |
200 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
15736016 |
atatggtcatagtacttattattctttcattttccattttatggtctcaaccaagttcatatccttgcaggtaaaaggatctgatgtcaatgaagacgag |
15736115 |
T |
|
| Q |
201 |
gacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatg |
300 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| | ||||| |
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|
| T |
15736116 |
gacgttgacattgagacagtagagaaggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctgccagcatctccctgccgcgatg |
15736215 |
T |
|
| Q |
301 |
ttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggaca |
400 |
Q |
| |
|
||||||||||||| |||| ||| ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15736216 |
ttcctgaacaggaagacaggtttttagaaagttcttcaaagattggggacagcaataactccggatcaccattttccgaagaagtggtagcaaatggaca |
15736315 |
T |
|
| Q |
401 |
tacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaa |
500 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| || ||||||| | |
|
|
| T |
15736316 |
tatgatgagtcatgcctcaagtccagttgaaggtaatgtcatgccattcaaaatatgcttgtaacatattattttcattcttaagaatccgaatttttca |
15736415 |
T |
|
| Q |
501 |
actgtactattgaataagtttgtgaggcctt |
531 |
Q |
| |
|
| || ||| ||||| | ||||||||||||| |
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|
| T |
15736416 |
attgaactgttgaaccactttgtgaggcctt |
15736446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 129 - 560
Target Start/End: Original strand, 17740109 - 17740538
Alignment:
| Q |
129 |
cttttccattttatagtctcaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaagg |
228 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17740109 |
cttttcctttttatggtctcaatcaagttcatatccttgcaggtaaaaggatctgatgtcaatgaagatgaggacgttgacattgtgacagtcgagaagg |
17740208 |
T |
|
| Q |
229 |
atcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttaga |
328 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | | ||||| |
|
|
| T |
17740209 |
atcctaatttcagcgactctgatatgtctgaggaagagctacgttatctaccagtatctcccattcccgatgttcctgaacaggaagacaggcttttaga |
17740308 |
T |
|
| Q |
329 |
tagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagtt |
428 |
Q |
| |
|
||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| || |
|
|
| T |
17740309 |
tagttcttcaaagattggggacagcaataactctggatcaccattttcagaagaagtggtagcaaatggacacatgatgagtcatgcctcaagtccactt |
17740408 |
T |
|
| Q |
429 |
gaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggc |
528 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||| || |||| ||| || || ||| ||||| | ||||| |||| |
|
|
| T |
17740409 |
gaaggtaatgtcacaccatgcaaaatatgcttgtaacggagtattttcattcttaagaatcccaatgttttaattgaactgttgaaacactttgtcaggc |
17740508 |
T |
|
| Q |
529 |
cttcgtatgagtgttggtttcttccctatgct |
560 |
Q |
| |
|
||| ||||||| | ||||||||||| ||||| |
|
|
| T |
17740509 |
ctt--tatgagtttaggtttcttccccatgct |
17740538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17739811 - 17739931
Alignment:
| Q |
1 |
tttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgtt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
17739811 |
tttgctcctgatttcaaagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttgaatcctgacactgataatgtatgtgaacatt |
17739910 |
T |
|
| Q |
101 |
atatggtcataggtcatatta |
121 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
17739911 |
atatggtcataggtcttatta |
17739931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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