View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18890_high_6 (Length: 514)
Name: NF18890_high_6
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 34713156 - 34713405
Alignment:
| Q |
21 |
caatacaacatatttgtgagttatacgaaaatttgtttgttctagcaaaaataagtcacaaaaaacttgaatcacataaatttgataaggaaagtttaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713156 |
caatacaacatatttgtgagttatacgaaaatttgtttgttctagcaaaaataagtcacaaaaaacttgaatcacataaatttgataaggaaagtttaag |
34713255 |
T |
|
| Q |
121 |
tgcaattgccttcaagtcatcttcagaagatgagtaacatttcactacaagtgatgcaaggctaagtaggagaaacaaaagaccaatataagattttccg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34713256 |
tgcaattgccttcaagtcatcttcagaagatgagtaacatttcactacaagtgatgcaaggctaagtaggagaaacaaaagaccaatagaagattttccg |
34713355 |
T |
|
| Q |
221 |
tccattgtcaaactaggaataacatagnnnnnnngaagttaataacatat |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34713356 |
tccattgtcaaactaggaataacatagaaaaaaagaagttaataacatat |
34713405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University