View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_high_7 (Length: 493)

Name: NF18890_high_7
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_high_7
NF18890_high_7
[»] chr3 (9 HSPs)
chr3 (26-477)||(48637143-48637594)
chr3 (26-85)||(54994766-54994825)
chr3 (26-82)||(7197873-7197929)
chr3 (26-79)||(592658-592711)
chr3 (26-82)||(45826152-45826208)
chr3 (27-82)||(40976947-40977002)
chr3 (46-82)||(2386292-2386328)
chr3 (1-30)||(7197815-7197844)
chr3 (1-30)||(48637623-48637652)
[»] chr6 (7 HSPs)
chr6 (26-83)||(21535865-21535922)
chr6 (26-82)||(18131782-18131838)
chr6 (26-82)||(18132988-18133044)
chr6 (26-80)||(7033339-7033393)
chr6 (26-84)||(21395589-21395647)
chr6 (28-82)||(16189724-16189780)
chr6 (1-30)||(18131867-18131896)
[»] scaffold0227 (2 HSPs)
scaffold0227 (26-82)||(11233-11289)
scaffold0227 (26-82)||(12381-12437)
[»] chr8 (4 HSPs)
chr8 (26-82)||(26246968-26247024)
chr8 (26-78)||(21661238-21661290)
chr8 (26-82)||(2411061-2411117)
chr8 (26-82)||(40254560-40254616)
[»] chr5 (11 HSPs)
chr5 (26-82)||(19934713-19934769)
chr5 (26-82)||(22950420-22950476)
chr5 (26-82)||(29526038-29526094)
chr5 (26-82)||(39701588-39701644)
chr5 (26-82)||(39702818-39702874)
chr5 (26-82)||(29527251-29527307)
chr5 (26-83)||(19139428-19139485)
chr5 (1-30)||(19934655-19934684)
chr5 (1-30)||(22950362-22950391)
chr5 (1-30)||(39701673-39701702)
chr5 (1-30)||(39702903-39702932)
[»] chr1 (12 HSPs)
chr1 (26-82)||(8089719-8089775)
chr1 (26-82)||(8788533-8788589)
chr1 (26-82)||(10582857-10582913)
chr1 (26-82)||(10584063-10584119)
chr1 (26-82)||(49122285-49122341)
chr1 (26-82)||(49123419-49123475)
chr1 (26-80)||(23540880-23540936)
chr1 (1-30)||(8089804-8089833)
chr1 (1-30)||(10582799-10582828)
chr1 (1-30)||(10584005-10584034)
chr1 (1-30)||(49122227-49122256)
chr1 (26-54)||(49122096-49122124)
[»] scaffold0011 (4 HSPs)
scaffold0011 (26-84)||(205587-205645)
scaffold0011 (26-84)||(211664-211722)
scaffold0011 (1-30)||(205674-205703)
scaffold0011 (1-30)||(211751-211780)
[»] chr4 (3 HSPs)
chr4 (1-82)||(45638693-45638775)
chr4 (26-82)||(11962187-11962243)
chr4 (26-82)||(3567123-3567179)
[»] chr7 (5 HSPs)
chr7 (26-83)||(6082565-6082622)
chr7 (26-82)||(6081358-6081414)
chr7 (1-30)||(6081300-6081329)
chr7 (1-30)||(6082507-6082536)
chr7 (26-75)||(27021419-27021468)
[»] scaffold0026 (2 HSPs)
scaffold0026 (27-82)||(80875-80930)
scaffold0026 (26-76)||(79678-79728)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-30)||(177948-177977)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 26 - 477
Target Start/End: Complemental strand, 48637594 - 48637143
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagtactcttgttcagaatgctactctaggcctaattgcaaaatg 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48637594 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagtactcttgttcagaatgctactctgggcctaattgcaaaatg 48637495  T
Q  126 attacacaactcaactaggttggccatggtagattgatctttaacagcaagtggaacagtggaagaacctaaaaagctaattttcaaattttgctttaaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637494 attacacaactcaactaggttggccatggtagattgatctttaacagcaagtggaacagtggaagaacctaaaaagctaattttcaaattttgctttaaa 48637395  T
Q  226 actgctgattaattttgattgcagtatcaaagaacagtcaaataaattcaaggaataagtctctgtggcaaagataagatcctaggactgatggtgtgaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637394 actgctgattaattttgattgcagtatcaaagaacagtcaaataaattcaaggaataagtctctgtggcaaagataagatcctaggactgatggtgtgaa 48637295  T
Q  326 atgagaaaatgaacagaacataaactcacctcttctgtcagccattgcaaggtatcccaatcaacttcttccctaacaaaaacttcttcgtacttagcta 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637294 atgagaaaatgaacagaacataaactcacctcttctgtcagccattgcaaggtatcccaatcaacttcttccctaacaaaaacttcttcgtacttagcta 48637195  T
Q  426 acccgagaccacgtatccattcgacgacaggggagtttttcggcccaaattg 477  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48637194 acccaagaccacgtatccattcgacgacaggggagtttttcggcccaaattg 48637143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 54994766 - 54994825
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagta 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54994766 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagta 54994825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 7197873 - 7197929
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7197873 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 7197929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 592658 - 592711
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttccta 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  592658 cttgggattatattgtaatcttactattagtttatattttgatatcagttccta 592711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 45826208 - 45826152
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45826208 cttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 45826152  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 40976947 - 40977002
Alignment:
Q  27 ttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40976947 ttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 40977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2386328 - 2386292
Alignment:
Q  46 ttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||| ||||||    
T  2386328 ttactattagtttatattttgatatcagtttctatca 2386292  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7197815 - 7197844
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  7197815 tagggagagaccaagctctcgaatacttgg 7197844  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 48637652 - 48637623
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  48637652 tagggagagaccaagctctcgaatacttgg 48637623  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 21535865 - 21535922
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21535865 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcag 21535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 18131838 - 18131782
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18131838 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 18131782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 18133044 - 18132988
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133044 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 18132988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 7033393 - 7033339
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033393 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctat 7033339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 21395647 - 21395589
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagt 84  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  21395647 cttgggattatattataatcttactgttagtttatattttgatatcagtttctatcagt 21395589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 16189724 - 16189780
Alignment:
Q  28 tgggattatattgtaatcttactattagtttatat--tttgatatcagttcctatca 82  Q
    ||||||| ||||||||| ||||||||| |||||||  ||||||||||||| ||||||    
T  16189724 tgggattctattgtaatattactattaatttatatgttttgatatcagtttctatca 16189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18131896 - 18131867
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  18131896 tagggagagaccaagctctcgaatacttgg 18131867  T

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Target: scaffold0227 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 11233 - 11289
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11233 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 11289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 12381 - 12437
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  12381 cttgggattatattgtaatattactattagtttatattttgatataagttcctatca 12437  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 26247024 - 26246968
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26247024 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 26246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 21661238 - 21661290
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcct 78  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21661238 cttgggaatatattgtaatcttactattagtttatattttgatatcagttcct 21661290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 2411117 - 2411061
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||    
T  2411117 cttgggattcgattgtaatattactattagtttatattttgatatcagtttctatca 2411061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 40254560 - 40254616
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||| ||| ||||||    
T  40254560 cttgggattctattgtaatattactattaatttatattttgatatctgtttctatca 40254616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 19934713 - 19934769
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19934713 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 19934769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 22950420 - 22950476
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22950420 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 22950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 29526094 - 29526038
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29526094 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 29526038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 39701644 - 39701588
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39701644 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 39701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 39702874 - 39702818
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39702874 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 39702818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 29527307 - 29527251
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29527307 cttgggattatattgtaatcttactattagtttatattttgatatctgttcctatca 29527251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 19139428 - 19139485
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcag 83  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  19139428 cttgggattatattgtaatcttactattagtttaaattttgatatcagtttctatcag 19139485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 19934655 - 19934684
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  19934655 tagggagagaccaagctctcgaatacttgg 19934684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22950362 - 22950391
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  22950362 tagggagagaccaagctctcgaatacttgg 22950391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39701702 - 39701673
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  39701702 tagggagagaccaagctctcgaatacttgg 39701673  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39702932 - 39702903
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  39702932 tagggagagaccaagctctcgaatacttgg 39702903  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 8089775 - 8089719
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8089775 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 8089719  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 8788589 - 8788533
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8788589 cttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 8788533  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 10582857 - 10582913
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10582857 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 10582913  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 10584063 - 10584119
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10584063 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 10584119  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 49122285 - 49122341
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49122285 cttgggattatattgtaatcttactattagtttatattttcatatcagttcctatca 49122341  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 49123419 - 49123475
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49123419 cttgggattatattctaatcttactattagtttatattttgatatcagttcctatca 49123475  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 23540936 - 23540880
Alignment:
Q  26 cttgggattatattgtaatcttactattagttt--atattttgatatcagttcctat 80  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  23540936 cttgggattatactgtaatcttactattagtttatatattttgatatcagttcctat 23540880  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8089833 - 8089804
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  8089833 tagggagagaccaagctctcgaatacttgg 8089804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10582799 - 10582828
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  10582799 tagggagagaccaagctctcgaatacttgg 10582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10584005 - 10584034
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  10584005 tagggagagaccaagctctcgaatacttgg 10584034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 49122227 - 49122256
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  49122227 tagggagagaccaagctctcgaatacttgg 49122256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 49122096 - 49122124
Alignment:
Q  26 cttgggattatattgtaatcttactatta 54  Q
    |||||||||||||||||||||||||||||    
T  49122096 cttgggattatattgtaatcttactatta 49122124  T

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Target: scaffold0011 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 205645 - 205587
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagt 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  205645 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatcagt 205587  T

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Target: scaffold0011; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 211722 - 211664
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcagt 84  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  211722 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatcagt 211664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 205703 - 205674
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  205703 tagggagagaccaagctctcgaatacttgg 205674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 211780 - 211751
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  211780 tagggagagaccaagctctcgaatacttgg 211751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 45638775 - 45638693
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgggattatattgtaatcttactattagtttata-ttttgatatcagttcctatca 82  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||| |||| ||||||    
T  45638775 tagggagagaccaagctctcgaattcttgggattatattgtaatattactattagtttatactttggatattagtttctatca 45638693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 11962187 - 11962243
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11962187 cttgggattatattgtaatctaactattagtttatattttgatatcagttcctatca 11962243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 3567123 - 3567179
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  3567123 cttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 3567179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 6082565 - 6082622
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcag 83  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6082565 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatcag 6082622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 6081358 - 6081414
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6081358 cttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 6081414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6081300 - 6081329
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  6081300 tagggagagaccaagctctcgaatacttgg 6081329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6082507 - 6082536
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  6082507 tagggagagaccaagctctcgaatacttgg 6082536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 27021419 - 27021468
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagtt 75  Q
    ||||||||| ||||||||| |||||||||  | |||||||||||||||||    
T  27021419 cttgggattctattgtaatattactattaagtaatattttgatatcagtt 27021468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 80875 - 80930
Alignment:
Q  27 ttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 82  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  80875 ttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 80930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 79678 - 79728
Alignment:
Q  26 cttgggattatattgtaatcttactattagtttatattttgatatcagttc 76  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  79678 cttgggattatattgtaatattactattagtttatattttgatatcagttc 79728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 177977 - 177948
Alignment:
Q  1 tagggagagaccaagctctcgaatacttgg 30  Q
    ||||||||||||||||||||||||||||||    
T  177977 tagggagagaccaagctctcgaatacttgg 177948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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