View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_high_9 (Length: 488)

Name: NF18890_high_9
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_high_9
NF18890_high_9
[»] chr1 (10 HSPs)
chr1 (168-384)||(27877958-27878172)
chr1 (1-78)||(27877789-27877866)
chr1 (1-78)||(10395304-10395381)
chr1 (4-78)||(40610018-40610092)
chr1 (1-78)||(12539204-12539281)
chr1 (16-78)||(3601164-3601226)
chr1 (1-78)||(2114444-2114521)
chr1 (1-78)||(17321963-17322040)
chr1 (33-78)||(9782430-9782475)
chr1 (20-76)||(32544292-32544348)
[»] chr6 (5 HSPs)
chr6 (1-78)||(32899991-32900068)
chr6 (1-76)||(11657722-11657797)
chr6 (12-60)||(27862053-27862101)
chr6 (1-70)||(13104324-13104392)
chr6 (21-78)||(29021910-29021967)
[»] chr8 (7 HSPs)
chr8 (1-76)||(26951388-26951463)
chr8 (9-74)||(21276375-21276440)
chr8 (27-76)||(18150955-18151004)
chr8 (12-67)||(33324804-33324859)
chr8 (30-78)||(11911332-11911380)
chr8 (32-70)||(34618975-34619013)
chr8 (12-65)||(9808675-9808728)
[»] chr7 (8 HSPs)
chr7 (1-76)||(17852432-17852507)
chr7 (1-76)||(12129579-12129654)
chr7 (1-78)||(9451548-9451625)
chr7 (16-67)||(34881071-34881122)
chr7 (12-67)||(31956950-31957005)
chr7 (11-78)||(36677715-36677782)
chr7 (2-60)||(20528987-20529045)
chr7 (16-62)||(36723724-36723770)
[»] chr3 (7 HSPs)
chr3 (1-76)||(1017574-1017649)
chr3 (1-76)||(26730819-26730894)
chr3 (1-76)||(47703683-47703758)
chr3 (12-67)||(4525394-4525449)
chr3 (5-58)||(20223243-20223296)
chr3 (12-78)||(10346430-10346496)
chr3 (31-76)||(7579623-7579668)
[»] chr2 (3 HSPs)
chr2 (1-76)||(41315813-41315888)
chr2 (1-65)||(10977845-10977909)
chr2 (1-73)||(28589903-28589975)
[»] chr5 (5 HSPs)
chr5 (1-74)||(30304909-30304982)
chr5 (1-76)||(24275330-24275405)
chr5 (1-76)||(24386808-24386883)
chr5 (12-77)||(24870529-24870594)
chr5 (15-67)||(10032435-10032487)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-76)||(255314-255389)
[»] chr4 (7 HSPs)
chr4 (1-76)||(16889229-16889304)
chr4 (12-75)||(35097007-35097071)
chr4 (12-67)||(37856927-37856982)
chr4 (1-67)||(46078546-46078612)
chr4 (1-46)||(23059319-23059364)
chr4 (5-60)||(17283486-17283541)
chr4 (37-76)||(32881904-32881943)
[»] scaffold0151 (1 HSPs)
scaffold0151 (13-67)||(21308-21362)
[»] scaffold0445 (1 HSPs)
scaffold0445 (31-76)||(12650-12695)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 168 - 384
Target Start/End: Original strand, 27877958 - 27878172
Alignment:
Q  168 cgctcctatacatatttaaaaaatagttgagagaaggtgttgtatgtactacgaatttgtttgatgttgttaagaacacgagagaatatatcatactatt 267  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  27877958 cgctcctatacatatttgaaaaatagttgagagaaggtgttgtatgtactatgaatttgtttgatgttgttaagaacacgagaga--atatcatactatt 27878055  T
Q  268 agacacaactttaaaatatacatagtgtccaatactaaaattacaaggnnnnnnnnaaggtgtaaatttacaagggctgtcaaggatgactaccaaaaaa 367  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||    
T  27878056 agacacaactttaaaatatacatagtgtacaatactaaaattacaaggttttttttaaggtgtaaatttacaagggctgtcaaggatgactaccacaaaa 27878155  T
Q  368 ctatgtgccatttcact 384  Q
    |||||||||||||||||    
T  27878156 ctatgtgccatttcact 27878172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27877789 - 27877866
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27877789 tagccgccacgttattgatgatgtacctacatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 27877866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10395381 - 10395304
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  10395381 tagcccccatgttattgatgatgtacctacatgtatttggcatattttagttaatgaaatacaatgattttcttcctt 10395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 40610018 - 40610092
Alignment:
Q  4 cccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  40610018 cccccacgttattgatgatgtacatacatgtatttgacatattttagctaatgaaatgtaatgattttcttcctt 40610092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12539204 - 12539281
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||    
T  12539204 tagcccccatattattgatgatgtacctacatttatttgacatattttagctaatgaaatgcaatgaatttcttcctt 12539281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 3601226 - 3601164
Alignment:
Q  16 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||| || |||||||    
T  3601226 tgatgatgtaccttcatgtatttgacatattttagctaatggaatgcaatgaatttcttcctt 3601164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2114444 - 2114521
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||||||  ||||| |||||| |||||  |||||||||||| |||||| ||||||||||||||||| || |||||||    
T  2114444 tagcccccgtgttatagatgatctacctttatgtatttggcacattttaactaatgaaatgcaatgaatttcttcctt 2114521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17321963 - 17322040
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||  ||||||||||||||||  ||||||| || || ||||||||||||||| |||||||| || |||||||    
T  17321963 tagcccccatattattgatgatgtaccctcatgtatgtgacacattttagctaatgaattgcaatgaatttcttcctt 17322040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 9782475 - 9782430
Alignment:
Q  33 gtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||    
T  9782475 gtatttggcatattttagctaatgaaatccaacgatttgcttcctt 9782430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 32544348 - 32544292
Alignment:
Q  20 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||||| || |||||    
T  32544348 gatgtaccttaatgtatttggcacattttaactaatgaaatgcaatgaatttcttcc 32544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32899991 - 32900068
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32899991 tagcccccacattattgatgatgcacctatatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 32900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11657722 - 11657797
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11657722 tagccctcatgtgattgatgatgtacctacatatatttggcatattttagctaatgaaatgcaatgattttcttcc 11657797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 27862101 - 27862053
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaat 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27862101 ttattgatgatgtacctacatgtatttgacatattttagctaatgaaat 27862053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13104392 - 13104324
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgattt 70  Q
    |||||||||  ||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  13104392 tagcccccatattattgacgatgtacctatatgtatttggcata-tttaactaatgaaatgcaatgattt 13104324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 29021910 - 29021967
Alignment:
Q  21 atgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||| || |||||||    
T  29021910 atgtacctacatatatttgacatattttagctaattaaatgcaatgaatttcttcctt 29021967  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26951463 - 26951388
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26951463 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatgatttccttcc 26951388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 21276440 - 21276375
Alignment:
Q  9 acgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 74  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21276440 acgttattgatgatgtatctacacgtatttggcatattttagctaatgaaatgcaatgatttcctt 21276375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 18151004 - 18150955
Alignment:
Q  27 ctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  18151004 ctacatgtatttagcatattttatctaatgaaatgcaatgatttccttcc 18150955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 33324804 - 33324859
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    |||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||    
T  33324804 ttattgatgatgtacctatatgtatttgacatattttagttaataaaatgcaatga 33324859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 11911380 - 11911332
Alignment:
Q  30 catgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||||||||| | |||||||||||||||||||||||| || |||||||    
T  11911380 catgtatttggtacattttagctaatgaaatgcaatgaatttcttcctt 11911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 34619013 - 34618975
Alignment:
Q  32 tgtatttggcatattttagctaatgaaatgcaatgattt 70  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  34619013 tgtatttgacatattttagttaatgaaatgcaatgattt 34618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 9808728 - 9808675
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaat 65  Q
    |||| |||||||| ||| |||||||||| || | ||||||||||||||||||||    
T  9808728 ttatagatgatgttccttcatgtatttgtcacactttagctaatgaaatgcaat 9808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17852432 - 17852507
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17852432 tagcccccatgtgattgatgatgtacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 17852507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12129579 - 12129654
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  12129579 tagcccccatgtgattgatgatgtacctacatgtatttgacatattttatctaatgaaatgcaatgattttcttcc 12129654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9451548 - 9451625
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | || |||||||    
T  9451548 tagcccccatattattgatgatgtacctacatgtatttgacatattttacctaatgaaatgcaattaatttcttcctt 9451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 34881071 - 34881122
Alignment:
Q  16 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  34881071 tgatgatgtatctacatgtatttggcatatttttgctaatgaaatgcaatga 34881122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 31957005 - 31956950
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    |||| ||||||| |||  ||||||||||||| |||||| |||||||||||||||||    
T  31957005 ttatagatgatgcaccctcatgtatttggcacattttaactaatgaaatgcaatga 31956950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 36677715 - 36677782
Alignment:
Q  11 gttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    ||||| |||||||| ||  |||||||||| || |||||||||||||||||||||| | || |||||||    
T  36677715 gttatagatgatgttccctcatgtatttgacacattttagctaatgaaatgcaataaatttcttcctt 36677782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 20529045 - 20528987
Alignment:
Q  2 agcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaat 60  Q
    |||| ||| ||||| |||||||||||| ||||||||| | |||||||| ||||||||||    
T  20529045 agcctccatgttatagatgatgtaccttcatgtatttagaatattttaactaatgaaat 20528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 36723770 - 36723724
Alignment:
Q  16 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgc 62  Q
    ||||||| ||||| | ||||||||||||||||| |||||||||||||    
T  36723770 tgatgatataccttcgtgtatttggcatatttttgctaatgaaatgc 36723724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1017649 - 1017574
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  1017649 tagcccccatgtgattgatgatgtacctacatgtatttggcatattttatctaatgaaatgcaataattttcttcc 1017574  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26730894 - 26730819
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26730894 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 26730819  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47703758 - 47703683
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  47703758 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaatgcactgttttccttcc 47703683  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 4525449 - 4525394
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4525449 ttattaatgatgtacgtacatgtatttggcatattttagctaatgaaatgcaatga 4525394  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 20223243 - 20223296
Alignment:
Q  5 ccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaa 58  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20223243 ccccatgttattgatgatgtacctacatgtatttggcatattttagttaatgaa 20223296  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 10346496 - 10346430
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 78  Q
    |||| |||||||||||  |||||||||| || |||||||||||||||||||||||| || |||||||    
T  10346496 ttatagatgatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttcctt 10346430  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7579623 - 7579668
Alignment:
Q  31 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  7579623 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 7579668  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41315888 - 41315813
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  41315888 tagcccccatgtgattgatgatatacctacatatatttggcatattttatctaatgaaatgcaatgatttccttcc 41315813  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10977845 - 10977909
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaat 65  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  10977845 tagcccccatattattgatgatatacctacatgtatttgacatattttagctaatgaaatacaat 10977909  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28589975 - 28589903
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcct 73  Q
    ||||||||| || ||||||||| |||||| ||||||||||||||||||| ||||||||||||| | |||||||    
T  28589975 tagcccccatgtgattgatgatatacctaaatgtatttggcatattttatctaatgaaatgcacttatttcct 28589903  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30304909 - 30304982
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 74  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  30304909 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaagtgcaatgatttcctt 30304982  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24275330 - 24275405
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24275330 tagcccccatgtgattgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24275405  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24386883 - 24386808
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24386883 tagcccccatgtgattgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24386808  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 24870529 - 24870594
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcct 77  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||    
T  24870529 ttattgatgatgtacctacatatatttgatatattttagctaatgaaatgcaatgattttcttcct 24870594  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 10032435 - 10032487
Alignment:
Q  15 ttgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    ||||||||||||||  ||||| ||| |||||||||| |||||||||| |||||    
T  10032435 ttgatgatgtacctttatgtagttgacatattttagttaatgaaatgtaatga 10032487  T

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Target: scaffold0010 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 255389 - 255314
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    |||||||||  | ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  255389 tagcccccatatgattgatgatatacctacatgtatttggcatactttatctaatgaaatgcaatgatttccttcc 255314  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16889229 - 16889304
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  16889229 tagctcccatgtgattgatgatgtacctacatgtatttggcatattttatctaacgaaatgcaatgattttcttcc 16889304  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 35097007 - 35097071
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatg-atttccttc 75  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35097007 ttatagatgatgtaccttcatgtatttggcacattttagctaatgaaatgcaatgaatttccttc 35097071  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 37856982 - 37856927
Alignment:
Q  12 ttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    ||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  37856982 ttattgatgatatacctacatgtatttgaaatattttacctaatgaaatgcaatga 37856927  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46078546 - 46078612
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    ||||||||| ||||| || ||  ||||| |||||||||| || ||||||||||||||||||||||||    
T  46078546 tagcccccatgttatagacgacttaccttcatgtatttgacacattttagctaatgaaatgcaatga 46078612  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23059364 - 23059319
Alignment:
Q  1 tagcccccacgttattgatgatgtacctacatgtatttggcatatt 46  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||    
T  23059364 tagcccccatgtgattgatgatgtatctacatgtatttggcatatt 23059319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 17283541 - 17283486
Alignment:
Q  5 ccccacgttattgatgatgtacctacatgtatttggcatattttagctaatgaaat 60  Q
    ||||| ||||| |||||||||||| |||||||||| || |||||||||| ||||||    
T  17283541 ccccatgttatagatgatgtaccttcatgtatttgtcacattttagctattgaaat 17283486  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 32881904 - 32881943
Alignment:
Q  37 ttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  32881904 ttggcatattttatctaatgaaatgcaatgattttcttcc 32881943  T

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Target: scaffold0151 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 21362 - 21308
Alignment:
Q  13 tattgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 67  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  21362 tattgatgatgtacccacatgtatttgacacattttagctaatgaaatgcaatga 21308  T

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Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 12650 - 12695
Alignment:
Q  31 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 76  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  12650 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 12695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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