View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_1 (Length: 725)
Name: NF18890_low_1
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 12 - 710
Target Start/End: Original strand, 6316919 - 6317618
Alignment:
| Q |
12 |
atcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316919 |
atcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatc |
6317018 |
T |
|
| Q |
112 |
tttgatgccttaaggcttcaaagttacgactatatcatagaaaggtttcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317019 |
tttgatgccttaaggcttcaaagttacgactatatcatagaaaggctgcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaag |
6317118 |
T |
|
| Q |
212 |
aaatgttattctacaagagcatttaaataaagaataaa-cttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317119 |
aaatgttattctacaagagcatttaaataaagaataaagcttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttg |
6317218 |
T |
|
| Q |
311 |
ctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaa |
410 |
Q |
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| T |
6317219 |
ctcgaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaa |
6317318 |
T |
|
| Q |
411 |
aaagtcacataccagctcagttcagactacttcatcagaagtgtcctttactatagaagtctgttaaagcaagtaatagcaaattaccttttacttcttt |
510 |
Q |
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| T |
6317319 |
aaagccgcataccagctcagttcagactacttcatcagaagtgtcctttactatagaagtctgttaaagcaagtaatagcaaattacattttacttcttt |
6317418 |
T |
|
| Q |
511 |
cttctcttctgttttggtatttacaaacatgagtgcatgagtaatattttacaaggtttggtaaactcttgagtataacaagaccaaatctacaaactta |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6317419 |
cttctcttctgttttggtatttacaaacatgagtgcataagtaatattttacaaggtttggtaaactctggagtataacaagaccaaatctacaaactta |
6317518 |
T |
|
| Q |
611 |
acctataaagtgtcaaaaaaggaagtatcacaacttacgcaagagcctctggaggaagaattggtcgaaactttgtatatgacatattagacatcaaatt |
710 |
Q |
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| T |
6317519 |
acctataaagtgtcaaaaaaggaagtatcacaacttacgcaagagcctctggaggaagaattggtcgaaactttgtatatgacatattagacatcaaatt |
6317618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 464 - 655
Target Start/End: Original strand, 6297585 - 6297783
Alignment:
| Q |
464 |
tagaagtctgttaaagcaagtaata-gcaaattaccttttacttctttcttctcttctgttttggtatttacaaa------catgagtgcatgagtaata |
556 |
Q |
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|||||| |||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| || |
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| T |
6297585 |
tagaagcctgttaaagcaagtaaaaagcaaattattttttacttctttcttctcctctgttttggtatttacaagactattcatcagtgcatgagtggta |
6297684 |
T |
|
| Q |
557 |
ttttacaaggtttggtaaactcttgagtataacaagaccaaatctacaaacttaacctataaagtgtcaaaaaaggaagtatcacaacttacgcaagag |
655 |
Q |
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| T |
6297685 |
ttttacaagattcagtgaactcttgtatataacaagactacatctacaaacatagcctataaagtgtacaaaaaggaagtatcataacttacacaagag |
6297783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 6297523 - 6297565
Alignment:
| Q |
421 |
accagctcagttcagactacttcatcagaagtgtcctttacta |
463 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6297523 |
accagctctgttcagactacttcatcagaagtgtcctttacta |
6297565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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