View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_low_10 (Length: 427)

Name: NF18890_low_10
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_low_10
NF18890_low_10
[»] chr8 (4 HSPs)
chr8 (11-408)||(11778945-11779342)
chr8 (236-406)||(11764536-11764706)
chr8 (146-408)||(11784362-11784623)
chr8 (207-408)||(11770722-11770925)
[»] chr7 (1 HSPs)
chr7 (363-408)||(24797691-24797736)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 11779342 - 11778945
Alignment:
Q  11 cacagaccagatagatcaactctaattaattctaacagaaaacactcctcatgaatacaacctagtgcatccatgtacgagcacgaaaacatgctataaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11779342 cacagaccagatagatcaactctaattaattctaacagaaaacactcctcatgaatacaacctagcgcatccatgtacgagcacgaaaacatgctataaa 11779243  T
Q  111 catgtatgtcatgaannnnnnngtaaactctctcgaacaatcttgcaaatgtatgtactgataaaaagagtttaaataaatcaatctaaacaagctttta 210  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779242 catgtatgtcatgaatttttttgtaaactctctcgaacaatcttgcaaatgtatgtactgataaaaagagtttaaataaatcaatctaaacaagctttta 11779143  T
Q  211 ttataaggaaatgaacttccatataaaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779142 ttataaggaaatgaacttccatataaaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatat 11779043  T
Q  311 ttttcatgagtgtataagcttgaattttctgcaaaataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggtttcttc 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779042 ttttcatgagtgtataagctggaattttctgcaaaataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggtttcttc 11778945  T

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Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 236 - 406
Target Start/End: Complemental strand, 11764706 - 11764536
Alignment:
Q  236 aaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagcttgaat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11764706 aaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagctggaat 11764607  T
Q  336 tttctgcaaaataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggtttct 406  Q
    |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  11764606 tttctgaaaaataatcattgcttccaatgttaatcaagtaaactgctttggccaacagagttgtagtttct 11764536  T

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Target: chr8; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 146 - 408
Target Start/End: Complemental strand, 11784623 - 11784362
Alignment:
Q  146 aacaatcttgcaaat-gtatgtactgataaaaagagtttaaataaatcaatctaaacaagcttttattataaggaaatgaacttccatataaaaaatgca 244  Q
    ||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||| | |||||||||||||  ||| ||||||| ||||||||| | ||    
T  11784623 aacaatcttacaaattgtttgtactgataaaaa-agtttaaataagtcaatttaaaaatgcttttattataaccaaaagaacttcaatataaaaa-taca 11784526  T
Q  245 gaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagcttgaattttctgcaa 344  Q
    |||| |||| |||| |||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||    
T  11784525 gaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatttttcatgagtgtataagctggaattttctacaa 11784426  T
Q  345 aataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggtttcttc 408  Q
    ||||||||||   |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  11784425 aataatcattccctcctatattaatcaagtaaacagctttggccagcagagttgtggtttcttc 11784362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 207 - 408
Target Start/End: Complemental strand, 11770925 - 11770722
Alignment:
Q  207 tttattataaggaaatgaacttccatat--aaaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggat 304  Q
    |||||||||| |||||||||||  ||||  |||||||  ||||| ||||  |||||||||||||||||||  |  ||| | ||||||||| ||||| |||    
T  11770925 tttattataacgaaatgaactttaatattaaaaaaatatagaagtaaagtgacttttacatactttgatccaagttgtaatattaccaaccaccattgat 11770826  T
Q  305 acatatttttcatgagtgtataagcttgaattttctgcaaaataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggttt 404  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||| |||||||||    
T  11770825 acatatttttcatgagtgtataagctggaattttctgcaaaataatcattgcctgcaatgttaatcaagtaaacagctttggccaacagatttgtggttt 11770726  T
Q  405 cttc 408  Q
    ||||    
T  11770725 cttc 11770722  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 24797736 - 24797691
Alignment:
Q  363 tgttaatcaagtaaacagctttggccaacagagttgtggtttcttc 408  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||    
T  24797736 tgttaatcaagtaaacagctctgaccagcagagttgtggtttcttc 24797691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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