View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_11 (Length: 413)
Name: NF18890_low_11
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 38404049 - 38404430
Alignment:
| Q |
16 |
aaaaaataaataaattacatagatactaaatcttattttttagttgtcaaatactagagcactaatcatcggagctgagaataaacaaaagtaatgtaga |
115 |
Q |
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| T |
38404049 |
aaaaaataaataaattacatagatactaaatcttattttttagttgtcaaatactagagcactaatcatcggagctgagaataaacaaaagtaatgtaga |
38404148 |
T |
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| Q |
116 |
atgagtgaagtgaagaaccttttctgcggcagtgacaactgaggcaacattgtctttatcaaaattctgcaagcctgtgataatcttcaaaagaagccaa |
215 |
Q |
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| T |
38404149 |
atgagtgaagtgaagaaccttttctgcggcagtgacaactgaggcaacattgtctttatcaaaattctgcaagcctgtgataatcttcaaaagaagccaa |
38404248 |
T |
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| Q |
216 |
atatttatcaacatgcacattacaacatttatggcaaaagaaaataaatgaaaaatgagatagaaatgggttttgcatggtttacttaacaccttgagag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38404249 |
atatttatcaacatgcacattacaacatttatggcaaaagaaaataaatgaaaaatgagatagaaatgggttttgcatggtttacttaacaccttgagag |
38404348 |
T |
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| Q |
316 |
ctgttctttcgcgaaaatccttaaggacagattctttggttgatgaaagtaatgctctagtagtaaaactggtttttctttt |
397 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38404349 |
ctgttctttcgcgaaaatcctttaggacagattctttggttgatgaaagtaatgctctagtagtaaaactggtttttctttt |
38404430 |
T |
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