View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_14 (Length: 374)
Name: NF18890_low_14
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 32254924 - 32254572
Alignment:
| Q |
9 |
agcagagatacctaacaattgtgtgacctcacggccccaaagaacaaaagccgctttgctgaattcataggagacttccccctcaattttgaacctaata |
108 |
Q |
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|||||| ||||||||||| | ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32254924 |
agcagaaatacctaacaactatgtgacctcacggtcccaaagaacaaaacccgccttgctgaattcataggagacttctacctcaattttgaacccaata |
32254825 |
T |
|
| Q |
109 |
tgctgacaattattgatagatttaagtagttcatcttcggtagggatctgtgagctggattgtgactgtgtacagaccaacggactctgggacataagtt |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32254824 |
tgcagacaattattgatagatttaagtagttcatcttcggtagggatctgtgagctggattgtgactgtgtacagaccaacgtactctgggacataagtt |
32254725 |
T |
|
| Q |
209 |
gtccatccttaggcaagctaaggggaaaagaataaatgttatgttagaaaaatgttaacattatatttcacattagaaagnnnnnnnncataaattaaaa |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32254724 |
gtccatccttaggcaagctaagaggaaaagaataaatgttgtgttagaaaaatgttaacattatatttcacattagaagaaaaaaaaacataaattaaaa |
32254625 |
T |
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| Q |
309 |
ctcaaagccaattaactcttccgaaattgcttgatttcaggaatgttatatat |
361 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32254624 |
ctcaaagtcaattaaatcttccgaaattgcttgatttcaggaatgttatatat |
32254572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 22079692 - 22079740
Alignment:
| Q |
9 |
agcagagatacctaacaattgtgtgacctcacggccccaaagaacaaaa |
57 |
Q |
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|||||| || ||||||| |||||||||||||||| |||||| ||||||| |
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| T |
22079692 |
agcagatatccctaacatttgtgtgacctcacggtcccaaacaacaaaa |
22079740 |
T |
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