View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_16 (Length: 341)
Name: NF18890_low_16
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 52631251 - 52630915
Alignment:
| Q |
1 |
aatcttttctagctaattacatatgggtcgcacatgcacgtagctaggggcttgtataattagttttccgttatatacaatatcatagatatatagggtt |
100 |
Q |
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| T |
52631251 |
aatcttttctagctaattacatatgggtcgcacatgcacgtagctaggggcttgtataattagttttccgttatatacaatatcatagatatatagggtt |
52631152 |
T |
|
| Q |
101 |
tgnnnnnnntaaataatcatcaatggcaaccgtgaagaacaacatcaagaacgttgttactattctgttgacattcaccatatgccgtataattgtatct |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631151 |
tgaaaaaaataaataatcatcaatggcaaccgtgaagaacaacatcaagaacgttgttactattctgttgacattcaccatatgccgtataattgtatct |
52631052 |
T |
|
| Q |
201 |
gaaggattaacagtggatcaaacactaacggagatcctccacataggacttgaaggtgaagtaagcacggaggccgctgaattagaagcagcttcattgg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52631051 |
gaaggattaacagtggatcaaacattaacggagatcctccacataggacttgaaggtgaagtaagcacggaggccgctaaattagaagcagcttcattgg |
52630952 |
T |
|
| Q |
301 |
attttgggaggttaagcagcaaaggagagacgattgc |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52630951 |
attttgggaggttaagcagcaaaggagagacgattgc |
52630915 |
T |
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