View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_19 (Length: 289)
Name: NF18890_low_19
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 40626353 - 40626100
Alignment:
| Q |
17 |
caaaactgagtccacagaccccaagctatggtcatgcaaactcaagcctaagggttgcataaaagatgagcgagtattcaccatctgattcaatccattt |
116 |
Q |
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| T |
40626353 |
caaaactgagtccacagaccccaagctatggtcatgcaaactcaagcctaagggttgcataaaagatgagtgagtattcaccatctgattcaatccattt |
40626254 |
T |
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| Q |
117 |
tcaggatgatcatgtgtttgtggtactggtgatgacagaagagagagagcacaagaagtgttgttgtcacaaaacattttgtatctttctgaaaaaggat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40626253 |
tcaggatgatcatgtgtttgtggtactggtgatgacagaagagagagagcacaagaagtgttgttgtcacaaaacattttgtatctttctgaaaaaggat |
40626154 |
T |
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| Q |
217 |
tggtcctgctaaaggtgcgactcatggatgaagctggaagaggttgattgttca |
270 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40626153 |
tggtcctgctaaacgtgcgactcatggatgaagctggaagaggttgattgttca |
40626100 |
T |
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