View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18890_low_23 (Length: 254)
Name: NF18890_low_23
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43814392 - 43814633
Alignment:
| Q |
1 |
ttttataccaattaactggtnnnnnnnttgtataccaattaaacaaataaaaagactatgcataagtatatgaataaattgatttgaataaagtaattaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814392 |
ttttataccaattaactggtaaaaaaattgtataccaattaaacaaataaaaagactatgcataagtatatgaataaattgatttgaataaagtaattaa |
43814491 |
T |
|
| Q |
101 |
tgagagtaataaacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaactgaattcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814492 |
tgagagtaataaacatgcctgccatccagcttcaatggaattgagatccttttcaaatgtgccagagaggacccatatttgagccaaactgaattcttga |
43814591 |
T |
|
| Q |
201 |
ctttccacatgtggggcccacacgtttaagtttgcctttgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814592 |
ctttccacatgtggggcccacacgtttaagtttgcctttgct |
43814633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 29213711 - 29213851
Alignment:
| Q |
91 |
aagtaattaatgagagtaataaacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaact |
190 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||| ||||||||||| | ||||||||| | |||||||| ||||||| || ||||||||||| || || |
|
|
| T |
29213711 |
aagtaattaatgaaaataatgaacatacctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagct |
29213810 |
T |
|
| Q |
191 |
gaattc---ttgactttccacatgtggggcccacacgttta |
228 |
Q |
| |
|
|||||| | |||||||||| |||||| ||||||| |||| |
|
|
| T |
29213811 |
gaattcatatggactttccacttgtgggacccacacattta |
29213851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 29254492 - 29254408
Alignment:
| Q |
112 |
aacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaactgaattc |
196 |
Q |
| |
|
||||||||||||| ||||||||||||| || | || ||||||||||| ||||||| || ||| ||||| ||||| || ||||| |
|
|
| T |
29254492 |
aacatgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattc |
29254408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University