View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_low_24 (Length: 242)

Name: NF18890_low_24
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_low_24
NF18890_low_24
[»] chr3 (2 HSPs)
chr3 (18-222)||(16456491-16456695)
chr3 (177-229)||(7404058-7404110)
[»] chr8 (3 HSPs)
chr8 (177-229)||(25641050-25641102)
chr8 (177-229)||(27813899-27813951)
chr8 (183-227)||(4743891-4743935)
[»] chr7 (1 HSPs)
chr7 (177-229)||(4683056-4683108)
[»] chr4 (1 HSPs)
chr4 (177-229)||(53302423-53302475)
[»] chr2 (4 HSPs)
chr2 (177-229)||(30269097-30269149)
chr2 (177-229)||(31332079-31332131)
chr2 (177-229)||(31338809-31338861)
chr2 (177-229)||(31481970-31482020)
[»] chr1 (4 HSPs)
chr1 (57-131)||(44135088-44135155)
chr1 (177-227)||(47694242-47694292)
chr1 (57-102)||(44126547-44126588)
chr1 (33-61)||(44135212-44135240)
[»] chr5 (2 HSPs)
chr5 (176-229)||(37190451-37190504)
chr5 (177-229)||(7413064-7413116)
[»] chr6 (1 HSPs)
chr6 (177-229)||(30824996-30825048)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 16456491 - 16456695
Alignment:
Q  18 agtgagaaaatttcaacatcttaatattacttcaaatgcattaaggtttcatgggtaaaatatatataaaagaaaataagagaaccatatactactacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456491 agtgagaaaatttcaacatcttaatattacttcaaatgcattaaggtttcatgggtaaaatatatataaaagaaaataagagaaccatatactactacag 16456590  T
Q  118 ggaagagttgaacatttagaatatagatagatactactacatacatatgaccattagttaaattttatttacttctctaatcttagtaatgtgattctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16456591 ggaagagttgaacatttagaatatagatagatactactacatacatatgacctttagttaaattttatttacttctctaatcttagtaatgtgattctcc 16456690  T
Q  218 tgcac 222  Q
    |||||    
T  16456691 tgcac 16456695  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 7404058 - 7404110
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||| ||||||||| ||||||||| || ||||||||||||||||| |||||||    
T  7404058 aaatattatttactcctctaatctcagaaatgtgattctcctgcatctatgct 7404110  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 25641102 - 25641050
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  25641102 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 25641050  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 27813951 - 27813899
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  27813951 aaattttatttacttctctaatctcagcaatgtgattctcctgcatctatgct 27813899  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 4743935 - 4743891
Alignment:
Q  183 tatttacttctctaatcttagtaatgtgattctcctgcacctatg 227  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||    
T  4743935 tatttacttctctaatctcagtaatgtgattgccgtgcacctatg 4743891  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 4683056 - 4683108
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  4683056 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 4683108  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 53302475 - 53302423
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  53302475 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 53302423  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 30269149 - 30269097
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  30269149 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 30269097  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31332079 - 31332131
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31332079 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31332131  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31338809 - 31338861
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31338809 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31338861  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 31482020 - 31481970
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    |||||||||||||||||||||||  |||||||||||||| |||| ||||||||    
T  31482020 aaattttatttacttctctaatc--agtaatgtgattcttctgcccctatgct 31481970  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 44135155 - 44135088
Alignment:
Q  57 attaaggtttcatgggtaaaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaaca 131  Q
    |||||||||||||||||||| ||||    |||||||||||||||||||||||   ||||||||||||||||||||    
T  44135155 attaaggtttcatgggtaaattata----aaagaaaataagagaaccatata---ctacagggaagagttgaaca 44135088  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 47694242 - 47694292
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatg 227  Q
    ||||||||||||||||||||||||  ||||||||||| | || ||||||||    
T  47694242 aaattttatttacttctctaatctccgtaatgtgattattctacacctatg 47694292  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 44126588 - 44126547
Alignment:
Q  57 attaaggtttcatgggtaaaatatatataaaagaaaataagagaac 102  Q
    |||||||||||||||||||||    |||||||||||||||||||||    
T  44126588 attaaggtttcatgggtaaaa----tataaaagaaaataagagaac 44126547  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 44135240 - 44135212
Alignment:
Q  33 acatcttaatattacttcaaatgcattaa 61  Q
    |||||||||||||||||||||||||||||    
T  44135240 acatcttaatattacttcaaatgcattaa 44135212  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37190504 - 37190451
Alignment:
Q  176 taaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    ||||||||||||||||||| ||| |  ||||||||||||||| ||| |||||||    
T  37190504 taaattttatttacttctcgaatatctgtaatgtgattctccagcatctatgct 37190451  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7413116 - 7413064
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    ||||||| |||||||||| ||| || ||||||||||||||| ||| |||||||    
T  7413116 aaattttttttacttctcgaatatttgtaatgtgattctccagcatctatgct 7413064  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 30825048 - 30824996
Alignment:
Q  177 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 229  Q
    ||||||||||||||  |||||||| |  ||||||||||||||||| |||||||    
T  30825048 aaattttatttactaatctaatctcatcaatgtgattctcctgcatctatgct 30824996  T

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