View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_26 (Length: 236)
Name: NF18890_low_26
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43814178 - 43813958
Alignment:
| Q |
1 |
aaaaaactttatgaattagtaaaagaaaaaatgacaagagtaataatacttgcattgcaggctgatgcgtacaaacacgggtgctacaacttaaaatgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43814178 |
aaaaaactttatgaattagtaaaagaaaaaatgacaagagtaataatacttgcattgcaggctgatgcgtacaaacacgggtgctacaacttaaaatgcc |
43814079 |
T |
|
| Q |
101 |
caggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttgatattatcttaacgattcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43814078 |
caggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttgatattatcttatcgattcg |
43813979 |
T |
|
| Q |
201 |
gaaggtaattttatcactttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43813978 |
gaaggtaattttatcactttc |
43813958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 29227405 - 29227510
Alignment:
| Q |
82 |
tgctacaacttaaaatgcccaggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttg |
181 |
Q |
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|||||||| ||| |||||||||||||||||||| ||| || ||| ||||||||||||||| || |||||| |||||| ||||||||| ||||||| |
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| T |
29227405 |
tgctacaatttattatgcccaggctttgttcaaactagtaataaaattgcacttggagctgcgatttctccaatttctacatataatggaggccaatttg |
29227504 |
T |
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| Q |
182 |
atatta |
187 |
Q |
| |
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|||||| |
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| T |
29227505 |
atatta |
29227510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 29246659 - 29246734
Alignment:
| Q |
96 |
atgcccaggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatgga |
171 |
Q |
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| T |
29246659 |
atgcccaggctttgttcaaactaacaataaatttgcaattggaactccaatttctccaatttctacatataatgga |
29246734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 29212943 - 29212834
Alignment:
| Q |
103 |
ggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttgatattatcttaacgattcgga |
202 |
Q |
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||||||||||||| ||||| || ||||| ||||||| | ||| |||||| ||||| ||||||||| ||||||||||||| ||||| ||| ||| |
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| T |
29212943 |
ggctttgttcaaactagcagtaatattgcaattggagcagcaatttctccaacttctacatataatggaggccaatttgatattagcttaatgatctgga |
29212844 |
T |
|
| Q |
203 |
aggtaatttt |
212 |
Q |
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|||||||||| |
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|
| T |
29212843 |
aggtaatttt |
29212834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 29254916 - 29255012
Alignment:
| Q |
96 |
atgcccaggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttgatattatctta |
192 |
Q |
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|
|||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||||| ||||| ||||||||| ||||| ||| |||| |||| |
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| T |
29254916 |
atgcccaggctttgttcaaactaacaaaaaaattgcaattggaagtgcaatttctccaacttctacatataatggagggcaatatgaaattacctta |
29255012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 29289364 - 29289400
Alignment:
| Q |
79 |
gggtgctacaacttaaaatgcccaggctttgttcaaa |
115 |
Q |
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||||||||||| ||||||||||| ||||||||||||| |
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| T |
29289364 |
gggtgctacaatttaaaatgccccggctttgttcaaa |
29289400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 30908142 - 30908065
Alignment:
| Q |
100 |
ccaggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaa |
177 |
Q |
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|||||||||||||||| |||||||| ||||| |||||||| || | | ||||||||||||| ||||||||||| |||| |
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| T |
30908142 |
ccaggctttgttcaaactagcaaaacatttgtacttggaggtgcactctctccagtttctacgtataatggacggcaa |
30908065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 30927473 - 30927386
Alignment:
| Q |
100 |
ccaggctttgttcaaattagcaaaaaatttgcacttggagctggaatatctccagtttctaagtataatggacagcaatttgatatta |
187 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| || | | |||||| ||||| ||||||||||| |||| |||| |||| |
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| T |
30927473 |
ccaggctttgttcaaactagcaaaacatttgcacttggaggtgcactctctccaccttctacgtataatggacggcaaattgaaatta |
30927386 |
T |
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