View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18890_low_28 (Length: 227)

Name: NF18890_low_28
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18890_low_28
NF18890_low_28
[»] chr4 (4 HSPs)
chr4 (11-69)||(48340170-48340228)
chr4 (14-69)||(50147274-50147329)
chr4 (16-69)||(36156839-36156892)
chr4 (32-63)||(54742249-54742280)
[»] chr7 (5 HSPs)
chr7 (16-69)||(37401965-37402018)
chr7 (16-69)||(32239614-32239667)
chr7 (16-69)||(27232337-27232390)
chr7 (16-69)||(37106305-37106358)
chr7 (16-69)||(17608186-17608239)
[»] chr1 (10 HSPs)
chr1 (16-69)||(14578960-14579013)
chr1 (16-69)||(23916288-23916341)
chr1 (16-69)||(15014162-15014215)
chr1 (16-69)||(35810267-35810320)
chr1 (16-69)||(15662448-15662501)
chr1 (16-69)||(40002478-40002531)
chr1 (31-69)||(25125357-25125395)
chr1 (23-68)||(14770799-14770844)
chr1 (16-69)||(46265537-46265590)
chr1 (33-69)||(42916712-42916748)
[»] chr6 (4 HSPs)
chr6 (16-69)||(10962351-10962404)
chr6 (16-69)||(5641141-5641194)
chr6 (18-63)||(9951321-9951366)
chr6 (16-69)||(17493262-17493315)
[»] chr3 (3 HSPs)
chr3 (16-69)||(33439172-33439225)
chr3 (16-69)||(54393982-54394035)
chr3 (16-63)||(45714262-45714309)
[»] chr8 (3 HSPs)
chr8 (16-77)||(10750201-10750262)
chr8 (16-69)||(33280569-33280622)
chr8 (16-69)||(27189483-27189536)
[»] chr5 (2 HSPs)
chr5 (31-69)||(2675458-2675496)
chr5 (33-69)||(20191180-20191216)
[»] chr2 (4 HSPs)
chr2 (16-69)||(39689713-39689766)
chr2 (16-69)||(20204320-20204370)
chr2 (31-81)||(33475768-33475818)
chr2 (16-69)||(38410167-38410220)
[»] scaffold0224 (1 HSPs)
scaffold0224 (33-69)||(7906-7942)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 48340170 - 48340228
Alignment:
Q  11 gattatactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48340170 gattttactcatttccatacctaaagttatgtgctttgaacaaacgaattgaatctaat 48340228  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 50147274 - 50147329
Alignment:
Q  14 tatactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||    
T  50147274 tatacttatttccatacctaaagttatgtgctttgaacaaacgaaatgaacctaat 50147329  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 36156839 - 36156892
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||    
T  36156839 tactcattttcatacctacagttatgtgctttgaacaaacgaattgaacctaat 36156892  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 54742280 - 54742249
Alignment:
Q  32 taaagttatgtgctttgaacaaacgaattgaa 63  Q
    ||||||||||||||||||||||||||||||||    
T  54742280 taaagttatgtgctttgaacaaacgaattgaa 54742249  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 37401965 - 37402018
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  37401965 tactcatttccatacctaaagttatgtgctttgaacaaacgaattgaacctaat 37402018  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 32239667 - 32239614
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  32239667 tactcatttacatacttaaagttatgtgctttgaacaaacgaattgaatctaat 32239614  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 27232337 - 27232390
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||| |||||    
T  27232337 tactcatttccatgcctaaagttatgcgctttgaacaaacgaattgaacctaat 27232390  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37106358 - 37106305
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| || |||||    
T  37106358 tactcatttccatacctaaagttatgcgctttgaacaaacgaatttaacctaat 37106305  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 17608239 - 17608186
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| ||||||||| |||||||||||||||||| |||| |||||    
T  17608239 tactcattttcatatctaaagttacgtgctttgaacaaacgaaatgaacctaat 17608186  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 14578960 - 14579013
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  14578960 tactcatttccatacctaaagttatgtgctttgaacaaacgaattgaacctaat 14579013  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 23916341 - 23916288
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  23916341 tactcatttccatacctaaagttacgtgttttgaacaaacgaattgaatctaat 23916288  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15014215 - 15014162
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  15014215 tactcgttttcatacctaaagttatgtgctttgaacaaacgaattgaatataat 15014162  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 35810320 - 35810267
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||| |||||    
T  35810320 tactcattttcatacctaaagttatttgctttgaacaaacgaattgaacctaat 35810267  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15662501 - 15662448
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||| |||||||  ||||||||||| ||||||||||||||||||||| |||||    
T  15662501 tactcctttccatgcctaaagttatgcgctttgaacaaacgaattgaacctaat 15662448  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40002531 - 40002478
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||||| || |||| |||||| ||||||||||||||||||||| |||||    
T  40002531 tactcatttccttacctaacgttatgcgctttgaacaaacgaattgaacctaat 40002478  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 25125357 - 25125395
Alignment:
Q  31 ctaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  25125357 ctaaagttatgtgctttgaacaaacgaaatgaacctaat 25125395  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 14770799 - 14770844
Alignment:
Q  23 ttccataactaaagttatgtgctttgaacaaacgaattgaatctaa 68  Q
    |||||||  ||||||||||||||||||||||||||| |||| ||||    
T  14770799 ttccatatataaagttatgtgctttgaacaaacgaaatgaacctaa 14770844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 46265537 - 46265590
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| ||||   ||||||||| ||||||||||||||||||||| |||||    
T  46265537 tactcattttcatactgaaagttatgcgctttgaacaaacgaattgaacctaat 46265590  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 42916712 - 42916748
Alignment:
Q  33 aaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  42916712 aaagttatgcgctttgaacaaacgaattgaacctaat 42916748  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 10962351 - 10962404
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  10962351 tactcattttcatacctaaagttatgtgctttgaacaaacgaattgaacctaat 10962404  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 5641141 - 5641194
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||||| || ||| ||||||||||||||||||||||||| ||| |||||    
T  5641141 tactcatttccttatctagagttatgtgctttgaacaaacgaatcgaacctaat 5641194  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 9951321 - 9951366
Alignment:
Q  18 ctcatttccataactaaagttatgtgctttgaacaaacgaattgaa 63  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||    
T  9951321 ctcatttccttacctaaagttatgcgctttgaacaaacgaattgaa 9951366  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 17493262 - 17493315
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| |||||||||||||||||||||| | |||||||| |||||    
T  17493262 tactcattttcatacctaaagttatgtgctttgaacatatgaattgaacctaat 17493315  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33439172 - 33439225
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  33439172 tactcattttcatacctaaagttatgtgctttgaacaaacgaattgaacctaat 33439225  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 54393982 - 54394035
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  54393982 tactcattttcatacctaaagttatgtgctttgaacaaacgaattgaacctaat 54394035  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 45714309 - 45714262
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaa 63  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  45714309 tactcattttcatacctaaagttatgtgctttgaacaaacgaattgaa 45714262  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 10750201 - 10750262
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaataggccgaa 77  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||| || |||||| ||||||    
T  10750201 tacttatttccatacctaaagttatgtgctttgaacaaaggaattaaacctaataagccgaa 10750262  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33280569 - 33280622
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||| |||||    
T  33280569 tactcatttccatacctaaagttatgtcctttgaacaaacgaactgaacctaat 33280622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 27189483 - 27189536
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||||||||| || ||||||| ||| |||||||| |||||    
T  27189483 tactcatttccatatctaaagttacgtcctttgaataaatgaattgaacctaat 27189536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 2675496 - 2675458
Alignment:
Q  31 ctaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2675496 ctaaagttatgtgctttgaacaaacgaattgaacctaat 2675458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 20191180 - 20191216
Alignment:
Q  33 aaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  20191180 aaagttatgcgctttgaacaaacgaattgaacctaat 20191216  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 39689766 - 39689713
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||||||||||||| ||| |||||||| |||||| ||||||||||||| |||||    
T  39689766 tactcatttccatacctagagttatgtactttgatcaaacgaattgaacctaat 39689713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 20204320 - 20204370
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||| ||||||||| ||||||||||||||   ||||||||||||||||||||||    
T  20204320 tacttatttccatacctaaagttatgtgc---gaacaaacgaattgaatctaat 20204370  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 33475818 - 33475768
Alignment:
Q  31 ctaaagttatgtgctttgaacaaacgaattgaatctaataggccgaatcaa 81  Q
    ||||||||||||| ||||||| ||||||||||| ||||||  |||||||||    
T  33475818 ctaaagttatgtgttttgaacgaacgaattgaacctaataaaccgaatcaa 33475768  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 38410167 - 38410220
Alignment:
Q  16 tactcatttccataactaaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    |||| ||||||| | ||||||||||| ||||| ||||||||||||||| |||||    
T  38410167 tacttatttccacacctaaagttatgcgctttaaacaaacgaattgaacctaat 38410220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 7906 - 7942
Alignment:
Q  33 aaagttatgtgctttgaacaaacgaattgaatctaat 69  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  7906 aaagttatgcgctttgaacaaacgaattgaacctaat 7942  T

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