View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18890_low_8 (Length: 488)
Name: NF18890_low_8
Description: NF18890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18890_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 45 - 263
Target Start/End: Complemental strand, 1738234 - 1738009
Alignment:
| Q |
45 |
ttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
144 |
Q |
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| T |
1738234 |
ttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
1738135 |
T |
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| Q |
145 |
actaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagt------agtgtatcattg |
237 |
Q |
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| T |
1738134 |
actaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatctagtagtgtaagtgtaccattg |
1738035 |
T |
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| Q |
238 |
acatcttccacccatttggcttgatt |
263 |
Q |
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| T |
1738034 |
acatcttccacccatttggcttgatt |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 62 - 393
Target Start/End: Complemental strand, 1716829 - 1716485
Alignment:
| Q |
62 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
149 |
Q |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
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| Q |
150 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatcttccac |
248 |
Q |
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| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatcttacgc |
1716630 |
T |
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| Q |
249 |
ccatttggcttgattgccatgctcatcaaaatgactgtatttcaatacattagcaaatacaaataaattcaccttatttcccacatctagccgaaactc- |
347 |
Q |
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| T |
1716629 |
tcgtttgacttgagttctatgctcatcaaaacgactctatttcaatacattagcagataaaaataagttcaccttattttccatatgaagttgaaactct |
1716530 |
T |
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| Q |
348 |
agactgtttaatttaggttatttcaaaacttaatagttctactcac |
393 |
Q |
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| T |
1716529 |
taactgtttactttaggttatttcaaaactt-atagttctactcac |
1716485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 1738009 - 1737905
Alignment:
| Q |
359 |
tttaggttatttcaaaacttaatagttctactcactccctgctaaacactagtgcaaatttctcaagtaaaataatcagtcaagaaaatattttcatcaa |
458 |
Q |
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| T |
1738009 |
tttaggttatttcaaaacttaatagttctactaactccctgctaaacactagtgcaaatttcttaagtaaaataaccagtcaagaaaatattttcatcaa |
1737910 |
T |
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| Q |
459 |
cagat |
463 |
Q |
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||||| |
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| T |
1737909 |
cagat |
1737905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 33577697 - 33577656
Alignment:
| Q |
290 |
tcaatacattagcaaatacaaataaattcaccttatttccca |
331 |
Q |
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| T |
33577697 |
tcaatacattagcaaataaaactaaaatcaccttatttccca |
33577656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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