View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18891_high_11 (Length: 239)
Name: NF18891_high_11
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18891_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 40841468 - 40841689
Alignment:
| Q |
8 |
gtgagatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaa |
107 |
Q |
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| T |
40841468 |
gtgaaatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaa |
40841567 |
T |
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| Q |
108 |
t---------ggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatttggggtaaaaagatcaaacattgatatgc |
198 |
Q |
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| T |
40841568 |
tggaagaaatggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatttgggataaaaagatcaaacattgatatgc |
40841667 |
T |
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| Q |
199 |
attttaatttttaaactattct |
220 |
Q |
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| T |
40841668 |
attttaatttttaaactattct |
40841689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 40846023 - 40846126
Alignment:
| Q |
8 |
gtgagatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaa |
107 |
Q |
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| T |
40846023 |
gtgaaatgaagaagaggaagtgcaacaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaa |
40846122 |
T |
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| Q |
108 |
tgga |
111 |
Q |
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|||| |
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| T |
40846123 |
tgga |
40846126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 40852845 - 40852913
Alignment:
| Q |
41 |
taaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatg |
109 |
Q |
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| T |
40852845 |
taaaagacagacacattttgaggaaccttaaagatgatgccatgttgccttgtttttgttgaaagaatg |
40852913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 26809206 - 26809285
Alignment:
| Q |
141 |
tttatcctcttttatttaggttgccaatttggggtaaaaagatcaaacattgatatgcattttaatttttaaactattct |
220 |
Q |
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| T |
26809206 |
tttatcctcttttatttaggttgccaatttggagtaaaaagatcaaacattgatatgcattttaatttttaaactattct |
26809285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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