View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18891_high_7 (Length: 295)
Name: NF18891_high_7
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18891_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 36458238 - 36458485
Alignment:
| Q |
33 |
caatatatttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaa |
132 |
Q |
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| T |
36458238 |
caatatatttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaa |
36458337 |
T |
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| Q |
133 |
tgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaac |
232 |
Q |
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| T |
36458338 |
tgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaac |
36458437 |
T |
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| Q |
233 |
acgttccagaccaccatataagttgcagaatttgatcatatacttcat |
280 |
Q |
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| T |
36458438 |
acgttccagaccaccatataagttgcagaatttgatcatatacttcat |
36458485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36458230 - 36458193
Alignment:
| Q |
1 |
ttgttttggaatcaacgttattactttaatgtcaatat |
38 |
Q |
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| T |
36458230 |
ttgttttggaatcaacgttattactttaatgtctatat |
36458193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
125 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
199 |
Q |
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| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 40871658 - 40871718
Alignment:
| Q |
139 |
tcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
199 |
Q |
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| T |
40871658 |
tcattttcttaaatgcatgccatgtcaacaaactatctgatccagcttgatgcgactttcc |
40871718 |
T |
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