View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18891_high_8 (Length: 291)
Name: NF18891_high_8
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18891_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 276
Target Start/End: Complemental strand, 48650197 - 48649946
Alignment:
| Q |
25 |
gtaggtgttaccaccggataataccattgaacctgctgctggtttctacggtggatattctttgttcctccttgtgtgtatggaannnnnnnnnnnnnnn |
124 |
Q |
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| T |
48650197 |
gtaggtgttaccaccggataataccattgaacctgctgctgatttctacggtggatattctttgttcctccttgtgtgtatggaagaggaggaggagaag |
48650098 |
T |
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| Q |
125 |
nnnnnnnnntgatgggagaagaccttggacgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcgca |
224 |
Q |
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| T |
48650097 |
gaggaggagtgatgggagaagaccttggacgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcgca |
48649998 |
T |
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| Q |
225 |
agccttctttgcagcctctgcatctttgaatgttacaaatccataccctttg |
276 |
Q |
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| T |
48649997 |
agccttctttgcagaatctgcatctttgaatgttacaaatccataccctttg |
48649946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 41290736 - 41290796
Alignment:
| Q |
196 |
ccattgatgatcacagttggttcctcgcaagccttctttgcagcctctgcatctttgaatg |
256 |
Q |
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| T |
41290736 |
ccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgcttccttgaatg |
41290796 |
T |
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