View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18891_low_2 (Length: 523)

Name: NF18891_low_2
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18891_low_2
NF18891_low_2
[»] chr3 (11 HSPs)
chr3 (9-509)||(11766894-11767382)
chr3 (130-224)||(38331198-38331292)
chr3 (157-261)||(27763754-27763858)
chr3 (157-261)||(30995969-30996073)
chr3 (22-119)||(10442128-10442225)
chr3 (391-495)||(10442305-10442409)
chr3 (132-206)||(25224787-25224861)
chr3 (132-205)||(8757433-8757506)
chr3 (140-253)||(20861289-20861402)
chr3 (132-256)||(1642644-1642768)
chr3 (132-260)||(48204290-48204418)
[»] chr7 (11 HSPs)
chr7 (132-261)||(29059838-29059967)
chr7 (132-261)||(31492136-31492265)
chr7 (157-263)||(19477254-19477359)
chr7 (160-261)||(8839288-8839389)
chr7 (134-223)||(37339714-37339803)
chr7 (157-260)||(28537424-28537523)
chr7 (164-261)||(23933662-23933759)
chr7 (170-257)||(13254118-13254205)
chr7 (157-211)||(29428796-29428850)
chr7 (132-252)||(11486723-11486843)
chr7 (132-188)||(33299185-33299241)
[»] chr6 (6 HSPs)
chr6 (134-257)||(12411185-12411308)
chr6 (134-264)||(12836878-12837008)
chr6 (157-266)||(21910233-21910341)
chr6 (157-261)||(28099276-28099380)
chr6 (157-224)||(21028846-21028911)
chr6 (157-224)||(21028983-21029048)
[»] chr4 (13 HSPs)
chr4 (134-261)||(9012303-9012430)
chr4 (132-261)||(31307045-31307174)
chr4 (132-261)||(46016182-46016311)
chr4 (134-261)||(38766122-38766249)
chr4 (131-263)||(51626284-51626416)
chr4 (157-260)||(35972377-35972480)
chr4 (139-263)||(14854636-14854760)
chr4 (170-224)||(31308367-31308421)
chr4 (157-224)||(33529327-33529394)
chr4 (157-247)||(35334102-35334192)
chr4 (134-230)||(32005127-32005223)
chr4 (157-261)||(45994555-45994659)
chr4 (194-257)||(38844209-38844272)
[»] scaffold0182 (1 HSPs)
scaffold0182 (132-261)||(26364-26493)
[»] chr8 (9 HSPs)
chr8 (132-261)||(4125003-4125132)
chr8 (132-261)||(2743966-2744095)
chr8 (132-261)||(13468724-13468853)
chr8 (157-261)||(19715729-19715834)
chr8 (170-257)||(15682966-15683053)
chr8 (139-224)||(7839239-7839324)
chr8 (157-261)||(36994504-36994608)
chr8 (157-224)||(30936074-30936141)
chr8 (158-260)||(12958090-12958192)
[»] chr5 (7 HSPs)
chr5 (132-261)||(10591960-10592089)
chr5 (157-224)||(36212966-36213033)
chr5 (140-247)||(5123485-5123592)
chr5 (132-263)||(31113365-31113496)
chr5 (139-260)||(22187984-22188103)
chr5 (165-258)||(18909313-18909406)
chr5 (140-224)||(29553609-29553693)
[»] chr2 (10 HSPs)
chr2 (131-260)||(31579207-31579336)
chr2 (132-261)||(5394430-5394558)
chr2 (131-260)||(42745094-42745223)
chr2 (134-205)||(25423833-25423904)
chr2 (157-258)||(9438140-9438241)
chr2 (142-224)||(12233064-12233146)
chr2 (132-206)||(37092174-37092248)
chr2 (183-256)||(17658500-17658573)
chr2 (196-261)||(44732616-44732681)
chr2 (132-260)||(37179980-37180103)
[»] chr1 (12 HSPs)
chr1 (132-223)||(15642526-15642617)
chr1 (140-260)||(22022154-22022274)
chr1 (157-260)||(39547368-39547471)
chr1 (139-261)||(28724705-28724827)
chr1 (157-257)||(9780993-9781093)
chr1 (164-258)||(12035585-12035680)
chr1 (132-263)||(18428121-18428251)
chr1 (164-224)||(33059737-33059797)
chr1 (132-263)||(16756113-16756244)
chr1 (157-224)||(42297446-42297513)
chr1 (157-266)||(10841045-10841155)
chr1 (132-224)||(36806681-36806773)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 509
Target Start/End: Complemental strand, 11767382 - 11766894
Alignment:
Q  9 caagaatattgatgttgtacagcagataacatatatacataatgtaattatcacaaaccacccattgacagcatatttgcaaatattacagaacacaact 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||          |||||||||||||    
T  11767382 caagaatattgatgttgtacagcaaataacatatatacataatgtaattatcacaa-ccacccattgacagcatatt----------acagaacacaact 11767294  T
Q  109 ggcgcttaacannnnnnnnnngttgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaac 208  Q
    |||||||||            |  ||||||||||||||| |||||| ||| |||| |||| ||||| ||||| ||||||||||  ||||||||||||| |    
T  11767293 ggcgcttaaatttttttttttg--gtaaatcgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagc 11767196  T
Q  209 tcttactaagagttttgacactcttacatgcccaaggctagattcgaacccagaatctaggccgcgtttaacatttaagaaagnnnnnnnnnnnnnnnnn 308  Q
     ||| ||||||||||| | | | || ||||||||||| ||||||||||||||| | ||||| |||| ||||||||||||| ||                     
T  11767195 acttgctaagagttttaatattgttgcatgcccaaggatagattcgaacccaggacctaggtcgcgcttaacatttaagagagcttttttatttttattt 11767096  T
Q  309 nactaaacgggaaaa-ggaaattaatattgaatgaagtgatattaatgaccattttactctctcccttaagattataaagccaaactcttacctctgagc 407  Q
     |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11767095 tactaaatgggaaaaaggaaattattattgaatgaagtgatattaatgaccattttactctctcccttaagattataaggccaaactcttacctctgagc 11766996  T
Q  408 tgatacctgatggccttgttattatttgtgtgacaaccttatgatttttatgaaaaatgcttttcctagagagcttgtgagattgttaacccttcacctt 507  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  11766995 tgatacccgatggccttgttattatttgtgtgacaaccttatgatttttatgaaaaatgcttttcatagagagcttgtgagattgttaaaccttcacctt 11766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 38331292 - 38331198
Alignment:
Q  130 gttgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||||||||| || ||   |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
T  38331292 gttgtaaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagtttt 38331198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 27763858 - 27763754
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||| | |||||||||||  |||||| ||||| |||||  ||||||||||| ||||| ||  |||||||||||| ||||||||    
T  27763858 aactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaa 27763759  T
Q  257 cccag 261  Q
    |||||    
T  27763758 cccag 27763754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 30995969 - 30996073
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||| | |||||||||||| | |||||||||| |||||  ||||||||||| || || || |||||||||||   ||||||||    
T  30995969 aactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaa 30996068  T
Q  257 cccag 261  Q
    |||||    
T  30996069 cccag 30996073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 10442128 - 10442225
Alignment:
Q  22 gttgtacagcagataacatatatacataatgtaattatcacaaaccacccattgacagcatatttgcaaatattaca-gaacacaactggcgcttaaca 119  Q
    ||||||||  |||| ||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||| |||||| ||||||||  |||||||||||    
T  10442128 gttgtacaagagatgacatatatacataatgtcattatcac-aaccacccattggccgcataattgcaaacattacaggaacacaatcggcgcttaaca 10442225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 10442305 - 10442409
Alignment:
Q  391 aactcttacctctgagctgatacctgatggccttgttattatttgtgtgacaaccttatgatttttatgaaaaatgcttttcctagagagcttgtgagat 490  Q
    |||||||||| || || | ||||| ||| ||||||||||||  || |  ||||||| |||||||| ||||||||| |||||  ||||||||||| |||||    
T  10442305 aactcttaccgctaaggtaatacccgatagccttgttattacctgagcaacaacctaatgattttcatgaaaaatactttttatagagagcttgcgagat 10442404  T
Q  491 tgtta 495  Q
    |||||    
T  10442405 tgtta 10442409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 25224861 - 25224787
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaa 206  Q
    |||||| ||||||||| || ||   |||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  25224861 tgtaaaccgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaa 25224787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 8757506 - 8757433
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggca 205  Q
    |||||| ||||||||| || |||  |||||||||||| |||||||| | |||||||||||| |||| |||||||    
T  8757506 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcggca 8757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 20861402 - 20861289
Alignment:
Q  140 gggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgc 239  Q
    |||||||| || |||| |||||||||||| |||||||| | |||| ||| ||| ||||||||||||  ||||  ||||||||||| || ||  | |||||    
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgc 20861303  T
Q  240 ccaaggctagattc 253  Q
    |||| ||| |||||    
T  20861302 ccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 1642768 - 1642644
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||| ||||| || |||  ||||||||| || ||||||||||  ||||||||||| |||||| ||| | |||||  |||| |||||| ||||      
T  1642768 tgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacgg 1642669  T
Q  232 ttacatgcccaaggctagattcgaa 256  Q
     | ||||  ||||||||||||||||    
T  1642668 ctgcatgttcaaggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 48204290 - 48204418
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| || |||  ||||||||| || |||||||  | |||||||| ||| |||||| || ||| ||||  ||||| ||||| ||  |     
T  48204290 tgtaaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttg 48204389  T
Q  232 ttacatgcccaaggctagattcgaaccca 260  Q
     | ||||||||||||| ||||||||||||    
T  48204390 ctgcatgcccaaggctggattcgaaccca 48204418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 29059967 - 29059838
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||||||||| |||||||||| |||||||||||| ||||||||||||  ||||  ||||||||||| |||||     
T  29059967 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactg 29059868  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  29059867 ctgcatgcccaaggctggattcgaacccag 29059838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 31492265 - 31492136
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||||||||| |||||||| | |||||||||||||||||||||||||  ||||  ||||||||||| |||||     
T  31492265 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactg 31492166  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  31492165 ctgcatgcccaaggctggattcgaacccag 31492136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 19477254 - 19477359
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||||  |||||||||||| |||||| |||||| ||||  ||||||||||| ||||| || ||||||||||||| ||||| ||    
T  19477254 aactgcggagactaatccctcag-cattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaa 19477352  T
Q  257 cccagaa 263  Q
    |||||||    
T  19477353 cccagaa 19477359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 8839288 - 8839389
Alignment:
Q  160 tgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaaccc 259  Q
    ||||||||| |||||||| |  ||||||||| |||||| ||||||| | |||  ||||||||||| || ||  | ||||||||||||| |||||||||||    
T  8839288 tgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaaccc 8839387  T
Q  260 ag 261  Q
    ||    
T  8839388 ag 8839389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 37339714 - 37339803
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttt 223  Q
    |||||||||||||| ||  ||  |||||||||||| |||||||| | |||| ||||||| |||| ||||||| ||||| |||||||||||    
T  37339714 taaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 28537523 - 28537424
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||||| |||    ||||| ||||||||||||  ||||  ||||||||||| ||  | || ||||||||||||| ||||||||    
T  28537523 aactgcggagactaatccctcaagcat----ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaa 28537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 23933662 - 23933759
Alignment:
Q  164 gagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaacccag 261  Q
    ||||| ||||||||||  ||||| | ||||||||||||||||||||||  |||| |||||| |  ||||| || || |||| || |||||||||||||    
T  23933662 gagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttgcaagctcaagactggattcgaacccag 23933759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 13254118 - 13254205
Alignment:
Q  170 aatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaac 257  Q
    |||||||| | |||||||||||||||||||||||||  ||||  ||||||||||  || ||  | |||||| |||||| |||||||||    
T  13254118 aatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaac 13254205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 29428796 - 29428850
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactct 211  Q
    |||||| ||||| |||||||| |||||||||||| | |||||| |||||||||||    
T  29428796 aactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaactct 29428850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 11486723 - 11486843
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||  ||||| |||| ||  | |||||||| ||| ||||||||||||| |||||  |||||||||| ||||      
T  11486723 tgtaaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacag 11486822  T
Q  232 ttacatgcccaaggctagatt 252  Q
     | ||||||||||||| ||||    
T  11486823 atgcatgcccaaggctggatt 11486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 33299241 - 33299185
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgg 188  Q
    |||||| ||||||| | |||||||||||||||||||| ||||| | || ||||||||    
T  33299241 tgtaaaccgggtattctccacgcataactgcggagactaatccattaagcattgtgg 33299185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 12411308 - 12411185
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactctt 233  Q
    |||| |||||||||||| |||  ||||| |||||| |||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| || ||  |    
T  12411308 taaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgct 12411209  T
Q  234 acatgcccaaggctagattcgaac 257  Q
     ||||||||||||| |||||||||    
T  12411208 gcatgcccaaggctggattcgaac 12411185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 12836878 - 12837008
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactctt 233  Q
    |||| ||||||||| || |||  ||||| |||||| |||||||||| |||||||||||| ||||||||||| | ||||  ||||||||||| || ||  |    
T  12836878 taaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgct 12836977  T
Q  234 acatgcccaaggctagattcgaacccagaat 264  Q
     |||||| |||||| ||||||||||||||||    
T  12836978 gcatgcctaaggctggattcgaacccagaat 12837008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 21910341 - 21910233
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| ||||||| |   ||||||||||||||||| |||||| |||||  ||||||||||| ||  | || ||||||||||||| ||||||||    
T  21910341 aactgcggagactaatccctgagt-attgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcccaaggctggattcgaa 21910243  T
Q  257 cccagaatct 266  Q
    ||||| ||||    
T  21910242 cccaggatct 21910233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 28099380 - 28099276
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||| | |||| ||| ||  |||||| || |||| |||  |||| |||||| |||||  | ||||||||||||| ||||||||    
T  28099380 aactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaa 28099281  T
Q  257 cccag 261  Q
    |||||    
T  28099280 cccag 28099276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 21028846 - 21028911
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||  | | |||||| ||| ||||||||||||||||||  |||||||||||    
T  21028846 aactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagtttt 21028911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 21028983 - 21029048
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||  | | |||||| ||| ||||||||||||||||||  |||||||||||    
T  21028983 aactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagtttt 21029048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 9012430 - 9012303
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactctt 233  Q
    |||||||||||||| || |||  |||||||||||| |||||||| | |||||||||||| || |||||||||| ||||  ||||||||||  |||||  |    
T  9012430 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgct 9012331  T
Q  234 acatgcccaaggctagattcgaacccag 261  Q
     |||||||||||||||||||||||||||    
T  9012330 gcatgcccaaggctagattcgaacccag 9012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 31307045 - 31307174
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||||||||| |||||||| | |||||||||||| ||||||||||||  ||||  ||||||||||| |||||     
T  31307045 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactg 31307144  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  31307145 ctgcatgcccaaggctggattcgaacccag 31307174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 46016311 - 46016182
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| ||||||  |||| ||||||| ||| | || | |||||||||||| ||||||||||||  ||||  ||||||||||| |||||     
T  46016311 tgtaaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactg 46016212  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  46016211 ctgcatgcccaaggctggattcgaacccag 46016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 38766249 - 38766122
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactctt 233  Q
    |||||||||||||| || |||  |||||||||||| |||||||| | ||||||| |||| |||||||||||| |||||  ||||||||||| || ||  |    
T  38766249 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgct 38766150  T
Q  234 acatgcccaaggctagattcgaacccag 261  Q
     ||||||||||||| ||||| |||||||    
T  38766149 gcatgcccaaggctggattcaaacccag 38766122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 51626284 - 51626416
Alignment:
Q  131 ttgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacact 230  Q
    ||||||||||||||||| || |||  |||||||||||| |||| ||| | || ||||||||| |||||| ||||| |||||  |||| |||||| |||||    
T  51626284 ttgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacact 51626383  T
Q  231 cttacatgcccaaggctagattcgaacccagaa 263  Q
      | ||||||||||||| ||||||||| |||||    
T  51626384 gctgcatgcccaaggctggattcgaactcagaa 51626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 35972480 - 35972377
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||  |||| |||||| || ||  |  ||||||| |||| ||||||||    
T  35972480 aactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattcgaa 35972381  T
Q  257 ccca 260  Q
    ||||    
T  35972380 ccca 35972377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 14854760 - 14854636
Alignment:
Q  139 cgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatg 238  Q
    ||||||||| || |||  |||||| ||||| |||||||| |  ||||| ||||| ||||||||||||| ||||  ||||||||||| ||  |  | ||||    
T  14854760 cgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatg 14854661  T
Q  239 cccaaggctagattcgaacccagaa 263  Q
    ||||||||| |||||||||||||||    
T  14854660 cccaaggctggattcgaacccagaa 14854636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 31308421 - 31308367
Alignment:
Q  170 aatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||||||||||||||||||| | ||||| |||||| |||||||||||    
T  31308421 aatccctcaaacattgtgggacctaaatagacggcagactcttcctaagagtttt 31308367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 33529394 - 33529327
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||| |  ||||||||||| ||||||||||||| ||||  |||||||||||    
T  33529394 aactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagtttt 33529327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 35334102 - 35334192
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggct 247  Q
    |||||||||||| |||||||| |  ||||||||||| |||||||||||  |||||  ||||||||||| || ||  | |||||||||||||    
T  35334102 aactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggct 35334192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 32005127 - 32005223
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacact 230  Q
    |||| ||||||||| || ||||||| ||||||||| |||| ||| | |||| || || |||||| ||||||| |||||  ||||||||||| |||||    
T  32005127 taaaccgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacact 32005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 45994659 - 45994555
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||| |||| ||| | ||||||| |||| ||||||||| ||  ||||  ||||||||||| ||  | || ||||||||||||| ||||||||    
T  45994659 aactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaa 45994560  T
Q  257 cccag 261  Q
     ||||    
T  45994559 tccag 45994555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 38844209 - 38844272
Alignment:
Q  194 aaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaac 257  Q
    |||||||||||| |||||| ||||||||||| || || || ||||||||| ||| |||||||||    
T  38844209 aaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaac 38844272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 26493 - 26364
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||||||||| |||| ||| |||||||||||||| ||||||||||||  ||||  ||||||||||| |||||     
T  26493 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactg 26394  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  26393 ctgcatgcccaaggctggattcgaacccag 26364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 4125003 - 4125132
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| || |||  |||||||||||| |||||||| | |||||||||||| ||||||||||||  ||||  ||||||||||| ||| |     
T  4125003 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtg 4125102  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  4125103 ctgcatgcccaaggcttgattcgaacccag 4125132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 2744095 - 2743966
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| || |||  |||||||||||| |||||||| | |||||||||||| |||||| || ||  ||||  ||||||||||| |||||     
T  2744095 tgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactg 2743996  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  2743995 ctgcatgcccaaggctggattcgaacccag 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 13468724 - 13468853
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||| ||||||||| ||  ||  |||||||||||| ||||| || | |||||||||||  |||||||||||| |||||  ||||||||||| || ||     
T  13468724 tgtaaaccgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctg 13468823  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     ||||||||||||||| |||||||||||||    
T  13468824 ctacatgcccaaggctggattcgaacccag 13468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 19715729 - 19715834
Alignment:
Q  157 aactgcggagacaaatccc-tcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcga 255  Q
    |||||||||||| |||||| || | |||||||||||| ||||||||||||| ||||  || |||||||| || ||  | ||||||||||||| |||||||    
T  19715729 aactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcga 19715828  T
Q  256 acccag 261  Q
    ||||||    
T  19715829 acccag 19715834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 15683053 - 15682966
Alignment:
Q  170 aatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaac 257  Q
    |||||||| | |||||||||||||||||||||||||  ||||  ||||||||||| || ||  | ||||||||||||| |||||||||    
T  15683053 aatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaac 15682966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 7839239 - 7839324
Alignment:
Q  139 cgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    ||||||||| || |||  |||||||||||| |||||||| | |||||||||||| ||||||||||||  ||||  |||||||||||    
T  7839239 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagtttt 7839324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 36994504 - 36994608
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||| ||||| |||||||| | | |||||||||| |||||||| |||||||||   |||||||||| || ||  | |||| |||||||| ||||||||    
T  36994504 aactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaa 36994603  T
Q  257 cccag 261  Q
    |||||    
T  36994604 cccag 36994608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 30936141 - 30936074
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||  ||||  |||||||||||    
T  30936141 aactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagtttt 30936074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 12958090 - 12958192
Alignment:
Q  158 actgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaac 257  Q
    ||||||||||| |||||||| | |||||||||||| ||||||||| ||  ||||  ||||||||||| || ||  | ||||||||| ||| ||||| |||    
T  12958090 actgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaac 12958189  T
Q  258 cca 260  Q
    |||    
T  12958190 cca 12958192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 10592089 - 10591960
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| || |||  |||||| ||||| |||||||| | |||||||||||  |||||||||||| |||||  ||||||||||| |||||     
T  10592089 tgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactg 10591990  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  10591989 ctgcatgcccaaggctggattcgaacccag 10591960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 36213033 - 36212966
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||||||||  |||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagtttt 36212966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 5123485 - 5123592
Alignment:
Q  140 gggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgc 239  Q
    |||||||| || |||  |||||||||||| |||||||| | |||||||||||| ||||||||||||  ||||  ||||||||||| |||||  | |||||    
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 5123584  T
Q  240 ccaaggct 247  Q
    ||||||||    
T  5123585 ccaaggct 5123592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 31113496 - 31113365
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    ||||||||||||||||  | |||  |||||||||||| |||||||| |  ||||||||| | |||||||||| |  ||||  ||||||||||| |||||     
T  31113496 tgtaaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactg 31113397  T
Q  232 ttacatgcccaaggctagattcgaacccagaa 263  Q
     | |||||||||||||  ||||||||| ||||    
T  31113396 ctgcatgcccaaggctgaattcgaacctagaa 31113365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 22187984 - 22188103
Alignment:
Q  139 cgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatg 238  Q
    ||||||||| || |||  |||||||||||| |||||||| |  ||||||||||| |||| ||||||| |||||  | ||||||||| || || ||  |||    
T  22187984 cgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactct--ccaagagttttaacgctgttgtatg 22188081  T
Q  239 cccaaggctagattcgaaccca 260  Q
    ||||||||| ||||| ||||||    
T  22188082 cccaaggctggattcaaaccca 22188103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 18909313 - 18909406
Alignment:
Q  165 agacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaacc 258  Q
    |||| |||||||| | ||||||||||   ||||| |||||||| |||  ||||||||||| |||||  | ||| ||||||||| ||||||||||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacc 18909406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 29553693 - 29553609
Alignment:
Q  140 gggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||| ||||||| |||||| ||||| |||| ||  | |||| ||||||| |||||| || ||||||||  |||||||||||    
T  29553693 gggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagtttt 29553609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 31579207 - 31579336
Alignment:
Q  131 ttgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacact 230  Q
    ||||||| ||||||||| || |||  ||||||||| || ||| |||| | ||||||||||| ||||||||||||| |||||  |||| |||||| |||||    
T  31579207 ttgtaaaccgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacact 31579306  T
Q  231 cttacatgcccaaggctagattcgaaccca 260  Q
     || ||||||||||||| ||||||||||||    
T  31579307 gttgcatgcccaaggctggattcgaaccca 31579336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 5394558 - 5394430
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    ||||||||| |||||| || ||   |||||||||||| |||||| | | |||||||||||| ||||||||||||  ||||  ||||||||||| ||| |     
T  5394558 tgtaaatcgagtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tg 5394460  T
Q  232 ttacatgcccaaggctagattcgaacccag 261  Q
     | ||||||||||||| |||||||||||||    
T  5394459 ctgcatgcccaaggctggattcgaacccag 5394430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 42745094 - 42745223
Alignment:
Q  131 ttgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacact 230  Q
    ||||||| ||||||||| || |||  |||||| ||||| |||||||| | |||||||| ||| |||| ||| ||| |||||  ||||||||||| ||| |    
T  42745094 ttgtaaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacatt 42745193  T
Q  231 cttacatgcccaaggctagattcgaaccca 260  Q
      | ||||||||||||| ||||||||||||    
T  42745194 gctgcatgcccaaggctggattcgaaccca 42745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 25423904 - 25423833
Alignment:
Q  134 taaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggca 205  Q
    |||||||||||||| ||||||  |||||| ||||| |||||||| | |||||||||||| ||||||||||||    
T  25423904 taaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggca 25423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 9438140 - 9438241
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    ||||| ||| || |||||||||| |||||||||||  ||||||||||||   |||| ||||||||||| || ||  | ||||||||||||| ||||||||    
T  9438140 aactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaa 9438239  T
Q  257 cc 258  Q
    ||    
T  9438240 cc 9438241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 12233064 - 12233146
Alignment:
Q  142 gtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||| ||| || |||||| |||||| |||||||| | |||||||  || |||||||||||||||||||  |||||||||||    
T  12233064 gtatcctccaagcgtaactgtggagactaatccctcgagcattgtgaaacttaaatgggcggcaaactctctctaagagtttt 12233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 37092174 - 37092248
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaa 206  Q
    |||||| ||||||||| ||  ||| |||||||||||| |||||||| | || ||||||||| |||||| ||||||    
T  37092174 tgtaaaccgggtatcctccgtgcacaactgcggagactaatccctcgagcactgtgggacccaaatggacggcaa 37092248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 17658573 - 17658500
Alignment:
Q  183 ttgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||  |||||||| |||||||||  |||||| |||| ||  | || ||||||||||||||||||||||    
T  17658573 ttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaa 17658500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 44732616 - 44732681
Alignment:
Q  196 atgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaacccag 261  Q
    ||||||||||  ||||  ||||||||||| |||||  | ||||||||||||| |||||||||||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccag 44732681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 37179980 - 37180103
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| || |||  || |||| |||| |||||||| |  ||||||||||  |||||||||||| |||||  |||||||     |||||     
T  37179980 tgtaaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactg 37180074  T
Q  232 ttacatgcccaaggctagattcgaaccca 260  Q
    || |||| ||||| || ||||||||||||    
T  37180075 ttgcatgtccaagactggattcgaaccca 37180103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 15642617 - 15642526
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttt 223  Q
    |||||||||||||||| || |||  |||||||||||  |||| ||| | |||||||||||| ||||||||||||||||||  ||||||||||    
T  15642617 tgtaaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 22022274 - 22022154
Alignment:
Q  140 gggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgc 239  Q
    |||||||| |||||   |||||||||||| |||||||| || ||||||||||| ||||||| |||||  |||  ||||||||||| |  ||  | |||||    
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  240 ccaaggctagattcgaaccca 260  Q
    |||||||| ||||||||||||    
T  22022174 ccaaggctggattcgaaccca 22022154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 39547368 - 39547471
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||||||||||  ||||| || ||||||||| ||||||||| ||||||| ||||   |||||||||||||||||  | ||||| |||| || ||||||||    
T  39547368 aactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaagactggattcgaa 39547467  T
Q  257 ccca 260  Q
    ||||    
T  39547468 ccca 39547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 28724827 - 28724705
Alignment:
Q  139 cgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatg 238  Q
    ||||||||| || |||  || ||||||||| |||||||| |||||||| ||||  |||||| ||||| |||||| ||||||||||| ||||| || ||||    
T  28724827 cgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatg 28724728  T
Q  239 cccaaggctagattcgaacccag 261  Q
      |||||||  ||||||| ||||    
T  28724727 ttcaaggctgaattcgaatccag 28724705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 9780993 - 9781093
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcgaa 256  Q
    |||| |||| || |||||||| | |||||||||||| |||||||||||  |||||  ||||||||||| || ||  | ||||||||||||| ||||||||    
T  9780993 aactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcgaa 9781092  T
Q  257 c 257  Q
    |    
T  9781093 c 9781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 12035680 - 12035585
Alignment:
Q  164 gagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagag-ttttgacactcttacatgcccaaggctagattcgaacc 258  Q
    ||||| |||||||| | |||||||||||| |||||||||||| |||||  ||||||| |||| ||| | || |||||| |||||| ||||||||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 18428121 - 18428251
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    |||||||||||||||| || |||  |||||| ||||| |||||||| | ||||||||| || |||||| | ||| |||||  |||| |||||| |||||     
T  18428121 tgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggcc-aaatggacagcagactctccctaaaagttttaacactg 18428219  T
Q  232 ttacatgcccaaggctagattcgaacccagaa 263  Q
     | ||||||||||| | |||||||| ||||||    
T  18428220 ctgcatgcccaaggttggattcgaatccagaa 18428251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 33059737 - 33059797
Alignment:
Q  164 gagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    ||||| ||| |||||||| |||||||||| ||||||||||||||||||   ||||||||||    
T  33059737 gagactaattcctcaaaccttgtgggacccaaatgggcggcaaactctccttaagagtttt 33059797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 16756244 - 16756113
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagttttgacactc 231  Q
    ||||||||| |||||| || |||  |||||||||||| |||||||| | |||||||||||| |||||  || ||  ||||  ||||||||||| || ||     
T  16756244 tgtaaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgctt 16756145  T
Q  232 ttacatgcccaaggctagattcgaacccagaa 263  Q
     | ||||||||| |||  |||| |||||||||    
T  16756144 ctgcatgcccaatgctgaattcaaacccagaa 16756113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 42297446 - 42297513
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||||||||| |||||||| | ||||||| |||| |||||| ||||| |||||  |||||||||||    
T  42297446 aactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagtttt 42297513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 10841155 - 10841045
Alignment:
Q  157 aactgcggagacaaatccctcaaacattgtgggacc-taaatgggcggcaaactcttactaagagttttgacactcttacatgcccaaggctagattcga 255  Q
    ||||||||| |  |||||||||| |||||||||||| |||||||| |||||  |||  |||||| |||| ||  | ||||||||||||||||  ||| ||    
T  10841155 aactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttga 10841056  T
Q  256 acccagaatct 266  Q
    ||||| |||||    
T  10841055 acccaaaatct 10841045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 36806773 - 36806681
Alignment:
Q  132 tgtaaatcgggtatcccccacgcataactgcggagacaaatccctcaaacattgtgggacctaaatgggcggcaaactcttactaagagtttt 224  Q
    |||||| ||||||||| || ||   |||||| ||||| |||||||| | |||||||| ||| |||||||||||| || ||  |||||||||||    
T  36806773 tgtaaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagtttt 36806681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University