View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18891_low_4 (Length: 378)
Name: NF18891_low_4
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18891_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 57 - 373
Target Start/End: Complemental strand, 10056457 - 10056153
Alignment:
| Q |
57 |
aaaggatgacctcactttcaacgcgaaactatgtagactcttctaatctacaccatatagataaatttcagacaaagcatgcacatatatcacaactcta |
156 |
Q |
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| T |
10056457 |
aaagggtgacctcactttcaacgtgaaattatgtagactcttctaatctacaccatatagataaatttcagacaaagcatgcatatatatcacaactcta |
10056358 |
T |
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| Q |
157 |
gaattgccatttccataacaaagaagtaagattacaacaaagatagaatacaaaacaaagtgctacttataaattggtgccaaatagtgacaaacataac |
256 |
Q |
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| T |
10056357 |
gaattgcaatttccataacaaagaagtaagattacaacaaagatagaata---------gtgctacttataaattggtgccaaatagtgacaaacataac |
10056267 |
T |
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| Q |
257 |
cgaggtttatgttgtatgtgtaaacaagttttaaactaacacgtgtcctaagtcgtgtcccctttgagttccccttcttctcccattggttttgcagtgc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
10056266 |
cgaggtttatgttgtatgtgtaaacaagttttaaactaacacgtgtcctaagtcgtgtcccctttgagtt---ctccttctcccattggttttgcagtgc |
10056170 |
T |
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| Q |
357 |
ccatttcctttgcttct |
373 |
Q |
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|||||||| |||||||| |
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| T |
10056169 |
ccatttccattgcttct |
10056153 |
T |
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