View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18891_low_6 (Length: 341)

Name: NF18891_low_6
Description: NF18891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18891_low_6
NF18891_low_6
[»] chr2 (23 HSPs)
chr2 (8-323)||(10336494-10336809)
chr2 (56-257)||(10348549-10348753)
chr2 (53-283)||(7114841-7115074)
chr2 (32-257)||(9283346-9283574)
chr2 (75-284)||(12018132-12018344)
chr2 (56-196)||(10372692-10372832)
chr2 (55-187)||(9060296-9060428)
chr2 (55-187)||(9316844-9316976)
chr2 (34-196)||(10353955-10354120)
chr2 (65-276)||(12005373-12005584)
chr2 (77-257)||(9329345-9329528)
chr2 (75-207)||(9275322-9275454)
chr2 (64-263)||(11986732-11986931)
chr2 (65-280)||(12011801-12012016)
chr2 (55-196)||(8572700-8572840)
chr2 (77-194)||(9321803-9321920)
chr2 (56-195)||(9292739-9292878)
chr2 (56-187)||(9357935-9358066)
chr2 (107-213)||(9365388-9365494)
chr2 (110-197)||(14551129-14551215)
chr2 (77-282)||(7612620-7612825)
chr2 (77-179)||(17565334-17565436)
chr2 (84-161)||(8578752-8578829)
[»] chr4 (2 HSPs)
chr4 (34-196)||(26575689-26575854)
chr4 (110-211)||(561965-562066)
[»] chr3 (2 HSPs)
chr3 (55-196)||(37463332-37463473)
chr3 (75-259)||(39428631-39428809)
[»] scaffold0667 (2 HSPs)
scaffold0667 (56-196)||(5269-5409)
scaffold0667 (248-321)||(5138-5211)
[»] chr8 (1 HSPs)
chr8 (31-321)||(41965893-41966192)
[»] chr1 (4 HSPs)
chr1 (45-196)||(29452539-29452690)
chr1 (44-196)||(29467012-29467164)
chr1 (26-196)||(29442528-29442698)
chr1 (45-196)||(29424024-29424175)
[»] chr5 (1 HSPs)
chr5 (75-261)||(36225490-36225681)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 10336809 - 10336494
Alignment:
Q  8 cgaagaaaatcctaaactctagcaccttccttccttacaatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcac 107  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10336809 cgaaaaaaatcctaaaccctagcaccttccttccttacaatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcac 10336710  T
Q  108 ttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10336709 ttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcat 10336610  T
Q  208 cctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccgttccactcaaccatcctttcatccaccacagcaacaacatcgct 307  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10336609 cctccgtcgcaaaaccgacctctaccacctccatttccctaacctaaccaccgctgttccactcaaccatcctttcatccaccacagcaacaacatcgct 10336510  T
Q  308 cttcttggttcatgca 323  Q
    ||||||||||||||||    
T  10336509 cttcttggttcatgca 10336494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 10348753 - 10348549
Alignment:
Q  56 cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 155  Q
    ||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348753 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 10348654  T
Q  156 ctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaa---aaccgacctctaccatctccatttccctaacct 252  Q
    | | |||||||||||||||||||||  ||||||| || ||||| |||||||||||||||| |||    |||||  ||||||| |||||||||||||||||    
T  10348653 ccctcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccctaacct 10348554  T
Q  253 aacca 257  Q
    |||||    
T  10348553 aacca 10348549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 7114841 - 7115074
Alignment:
Q  53 gatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcg 152  Q
    ||||||||||||||||| || |||||||||||||| ||  |||| ||   ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  7114841 gatcttccgccggaaatactatccgaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcg 7114940  T
Q  153 attctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaa-aac--cgacctctaccatctccatttccctaa 249  Q
    |||| |||||||||||||||||||| ||  |||||||| ||||||| ||| |||||||||||| ||| |||  ||| |||||||| ||||||||||||||    
T  7114941 attcccacaaattcatcaaccttcatcttaaaaattccttcaatttcaacttcatcctccgtcacaagaacaacgatctctaccaactccatttccctaa 7115040  T
Q  250 cctaaccaccgccgttccactcaaccatcctttc 283  Q
    |||||||  ||||||||||||||||| |||||||    
T  7115041 cctaaccgacgccgttccactcaaccttcctttc 7115074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 32 - 257
Target Start/End: Original strand, 9283346 - 9283574
Alignment:
Q  32 ccttccttccttacaatggcg---gatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacct 128  Q
    |||||||||||| ||||||||   |||||||||||||| || ||  |||||||||||||| | ||||| ||||||||||| ||||||||||||||||| |    
T  9283346 ccttccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaactt 9283445  T
Q  129 caaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacct 228  Q
    | |||||||||  |||| |||| |||||||||||||||||||||||||||||| ||| ||||||||| || || ||||||||||||| ||| ||| | ||    
T  9283446 ctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaacttcaaactcatcctccgtcacaagaccaatct 9283545  T
Q  229 ctaccatctccatttccctaacctaacca 257  Q
    |||||| ||| ||||||||||||||||||    
T  9283546 ctaccaactcgatttccctaacctaacca 9283574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 12018132 - 12018344
Alignment:
Q  75 ccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaacct 174  Q
    |||||||||||||||| ||||| || ||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||| |||| ||| ||    
T  12018132 ccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12018231  T
Q  175 tcacctccaaaa---ttccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccgttccactc 271  Q
    ||| ||| ||||    ||||||||||| |||||||||||||||| | | ||| | |||||||| ||||||||||||| ||||||||||| | | ||||||    
T  12018232 tcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacgacacccatctctaccaactccatttccctaccctaaccaccgtcatcccactc 12018331  T
Q  272 aaccatcctttca 284  Q
    |||||||||||||    
T  12018332 aaccatcctttca 12018344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 10372832 - 10372692
Alignment:
Q  56 cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 155  Q
    |||||||| || |||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  10372832 cttccgcctgatattctcgccgaagtcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgatt 10372733  T
Q  156 ctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  10372732 cccacaaattcatcaaccttcacctccaaaattccctcaat 10372692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 9060296 - 9060428
Alignment:
Q  55 tcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgat 154  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9060296 tcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgat 9060395  T
Q  155 tctcacaaattcatcaaccttcacctccaaaat 187  Q
    |||||||| ||||  |||||| ||||| |||||    
T  9060396 tctcacaacttcactaacctttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 9316976 - 9316844
Alignment:
Q  55 tcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgat 154  Q
    ||||||||||||||| ||| |||||||||||||||  ||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||    
T  9316976 tcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagat 9316877  T
Q  155 tctcacaaattcatcaaccttcacctccaaaat 187  Q
    |||||||| |||||||||||||||||| |||||    
T  9316876 tctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 10354120 - 10353955
Alignment:
Q  34 ttccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctca 130  Q
    |||||||||||||||||||| |   ||||| |||||||||||| |||||||| | ||||| |||||||| | |||||||||| ||||||||||||| |||    
T  10354120 ttccttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttca 10354021  T
Q  131 aaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    |||||| |||||||| ||||||||||  |||||||||||||||||||||||  |||||||| ||||    
T  10354020 aaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaat 10353955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 65 - 276
Target Start/End: Original strand, 12005373 - 12005584
Alignment:
Q  65 gaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaat 164  Q
    ||||| ||| |||||||||||||||| |||||     ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||||||||| |    
T  12005373 gaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaact 12005472  T
Q  165 tcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccgt 264  Q
    ||| ||||||||| ||  ||||||| |||||| | ||||| |||||| | | ||||||| | |||| ||| |||||||||||||| |||||||||||| |    
T  12005473 tcaccaaccttcatctaaaaaattctctcaatctcaaccttatcctcggccacaaaaccaatctcttccacctccatttccctaatctaaccaccgccat 12005572  T
Q  265 tccactcaacca 276  Q
     |||||||||||    
T  12005573 cccactcaacca 12005584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 9329528 - 9329345
Alignment:
Q  77 gaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 176  Q
    |||||| ||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  177 acctccaa---aattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaacca 257  Q
    ||||| ||   |||||||||||||| ||||||||||| |  | ||| ||||| |||||||| ||| || | ||||| |||||||    
T  9329428 acctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaacca 9329345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 9275454 - 9275322
Alignment:
Q  75 ccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaacct 174  Q
    |||||||||||||||| ||||| ||  ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| ||||| |||||||||||    
T  9275454 ccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacct 9275355  T
Q  175 tcacctccaaaattccctcaattttaacctcat 207  Q
    ||| ||| |||||||||||||||| ||||||||    
T  9275354 tcatctcaaaaattccctcaatttcaacctcat 9275322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 263
Target Start/End: Original strand, 11986732 - 11986931
Alignment:
Q  64 ggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaa 163  Q
    ||||||| ||||||||||||||||||| ||||      ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| |||||||||||     
T  11986732 ggaaattatctccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaac 11986831  T
Q  164 ttcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccg 263  Q
    |||| ||| |||||||||  ||| ||   ||| || |||||||||||||||| ||| ||| | ||||| || ||||||||||||||||||||||||||||    
T  11986832 ttcaccaatcttcacctcagaaactctgacaacttcaacctcatcctccgtcacaacaccaatctctatcaactccatttccctaacctaaccaccgccg 11986931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 280
Target Start/End: Original strand, 12011801 - 12012016
Alignment:
Q  65 gaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaat 164  Q
    ||||| ||| |||||||||||||||| ||||      ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |    
T  12011801 gaaatactcaccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaact 12011900  T
Q  165 tcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccgt 264  Q
    ||| ||| ||||||||| |||| || | ||| || |||||||||||||| | ||| ||| | ||||| || ||||||||||| ||| |||||||| |  |    
T  12011901 tcaccaatcttcacctcaaaaactctcacaacttcaacctcatcctccgccacaacaccaatctctatcaactccatttccccaacttaaccacccctct 12012000  T
Q  265 tccactcaaccatcct 280  Q
    ||||||| | ||||||    
T  12012001 tccactccatcatcct 12012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 8572700 - 8572840
Alignment:
Q  55 tcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgat 154  Q
    ||||||| |||||||  || | ||||||||||||||  |||| || |||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  8572700 tcttccgtcggaaatagtcactgaaatcttctcccgcataccagt-aaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgat 8572798  T
Q  155 tctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    || ||||| |||| ||||||||||||| ||||||||||||||    
T  8572799 tcccacaacttcaccaaccttcacctcaaaaattccctcaat 8572840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 9321920 - 9321803
Alignment:
Q  77 gaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 176  Q
    |||||| ||||||| |||||||| ||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  177 acctccaaaattccctca 194  Q
    | ||| ||||||||||||    
T  9321820 atctcaaaaattccctca 9321803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 9292878 - 9292739
Alignment:
Q  56 cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 155  Q
    |||||||| |||||  || ||||||||||||||||  |||| || |||||||||||| ||||||||||||  |||||||||||||||||| |||||||||    
T  9292878 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 9292779  T
Q  156 ctcacaaattcatcaaccttcacctccaaaattccctcaa 195  Q
    ||||||  ||||  |||||||||||| |||||||||||||    
T  9292778 ctcacagcttcactaaccttcacctcaaaaattccctcaa 9292739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 9358066 - 9357935
Alignment:
Q  56 cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 155  Q
    |||||||||||||| ||| || |||| || | ||| ||||| || |||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  9358066 cttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 9357967  T
Q  156 ctcacaaattcatcaaccttcacctccaaaat 187  Q
    ||||||| ||||| |||||||||||| |||||    
T  9357966 ctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 9365494 - 9365388
Alignment:
Q  107 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctca 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||| || ||| |||| |||  ||||||  ||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaactccaacaatttctacctca 9365395  T
Q  207 tcctccg 213  Q
    || ||||    
T  9365394 tcatccg 9365388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 14551215 - 14551129
Alignment:
Q  110 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaatt 197  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||  |||||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaatt 14551129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 7612825 - 7612620
Alignment:
Q  77 gaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 176  Q
    |||||| |||| || ||||||||  || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| ||||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  177 acctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgccgttccactcaacca 276  Q
    ||||| |||| ||  | ||||| |||||| || |  | |||||  ||||  |||||||  |  |||||||||| ||||||||  | ||| ||||||||||    
T  7612725 acctcaaaaactctttaaatttcaacctcgtcttatgccgcaactccgaattctaccaaattgatttccctaatctaaccacaacagtttcactcaacca 7612626  T
Q  277 tccttt 282  Q
    ||||||    
T  7612625 tccttt 7612620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 17565334 - 17565436
Alignment:
Q  77 gaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 176  Q
    |||||| |||| || ||||| ||  |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| || || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  177 acc 179  Q
    |||    
T  17565434 acc 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 8578752 - 8578829
Alignment:
Q  84 tctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcaca 161  Q
    ||||||| ||||||||  |||| |||||||||||||||||||  || |||||||||  |||||| || ||||| ||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 8578829  T

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Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 26575854 - 26575689
Alignment:
Q  34 ttccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctca 130  Q
    |||||||||||||||||||| |   ||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  26575854 ttccttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttca 26575755  T
Q  131 aaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||  |||||||| ||||    
T  26575754 aaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaat 26575689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 562066 - 561965
Alignment:
Q  110 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcatcc 209  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| ||||| ||||  |||||||||||| |||| ||||||||||||||||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaattttaacctcatcc 561967  T
Q  210 tc 211  Q
    ||    
T  561966 tc 561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 37463473 - 37463332
Alignment:
Q  55 tcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgat 154  Q
    ||||||||||||||| ||| |||||||| ||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  37463473 tcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgat 37463374  T
Q  155 tctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    |||||||| |||||||||||||| ||| ||||| ||||||||    
T  37463373 tctcacaacttcatcaaccttcatctcaaaaatcccctcaat 37463332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 259
Target Start/End: Complemental strand, 39428809 - 39428631
Alignment:
Q  75 ccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaacct 174  Q
    |||||||| ||||||| ||||||||  |||| || |||| |||||||||||| ||||||| | |||||||||||||| |||| ||||| ||||     ||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca-----ct 39428716  T
Q  175 tcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccacc 259  Q
    ||||||| |||| | |||||| || ||||||||||| || | |||   | | |||||||| ||| ||||||||||||||||||||    
T  39428715 tcacctcaaaaactacctcaacttcaacctcatccttcgccacaactgcaatctctaccaactcgatttccctaacctaaccacc 39428631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 5409 - 5269
Alignment:
Q  56 cttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 155  Q
    ||||||||||| |  ||| | |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5409 cttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgatt 5310  T
Q  156 ctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    ||||||| |||||||||||||||| | ||||||||||||||    
T  5309 ctcacaacttcatcaaccttcaccgcaaaaattccctcaat 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 5211 - 5138
Alignment:
Q  248 aacctaaccaccgccgttccactcaaccatcctttcatccaccacagcaacaacatcgctcttcttggttcatg 321  Q
    ||||| ||||||||||||||||||||||| |||||||  |   |||||| |||||| |||||| | ||||||||    
T  5211 aacctcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacattgctcttatcggttcatg 5138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 41965893 - 41966192
Alignment:
Q  31 accttccttccttacaatggcgg---atcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacc 127  Q
    |||||||||||| |||||| |||   |||| ||||| ||||| ||| | |||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  41965893 accttccttcctcacaatgacggttgatctaccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacc 41965992  T
Q  128 tcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaattttaacctcatcctccgtcgcaaaaccgacc 227  Q
    || |||||||||  ||||||||||||||| ||||| ||||||||||||||||||  ||| |||||||||     | | ||||| || | ||| || || |    
T  41965993 tcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatc 41966092  T
Q  228 tctaccatctc------catttccctaacctaaccaccgccgttccactcaaccatcctttcatccaccacagcaacaacatcgctcttcttggttcatg 321  Q
    |||||||  ||       ||||| |||||||||||||||||||||||||||||||||||||| | |  ||||||| ||||||| ||||||| ||||||||    
T  41966093 tctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaaccatcctttcttgcgtcacagcaccaacatcactcttctgggttcatg 41966192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 29452539 - 29452690
Alignment:
Q  45 caatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatc 144  Q
    |||||||||||||||||||||| || ||  |||  ||| |||| |  ||||||||  |||| || ||||||||||| |||||||||||||||||| ||||    
T  29452539 caatggcggatcttccgccggagatacttaccggtatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatc 29452638  T
Q  145 cttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    | |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29452639 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 29452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 29467012 - 29467164
Alignment:
Q  44 acaatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaat 143  Q
    |||||||| |||||||| ||||||||  || ||| |||| |||| |  ||||||||  |||| || ||||||||||| |||||||||||||||||| |||    
T  29467012 acaatggctgatcttcctccggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaat 29467111  T
Q  144 ccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    || |||||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  29467112 ccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaat 29467164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 29442528 - 29442698
Alignment:
Q  26 ctagcaccttccttccttacaatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaa 125  Q
    |||| ||||||||||||| |||||| ||||||||||||||| || ||  ||| |||| |||| |  |||||||   |||| || ||||||||||| ||||    
T  29442528 ctagaaccttccttccttccaatggtggatcttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaa 29442627  T
Q  126 cctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
    | || ||||||||| ||||| |||||||||| || || |||||||| |||||||||||||||| |||||||    
T  29442628 cgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaat 29442698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 29424175 - 29424024
Alignment:
Q  45 caatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatc 144  Q
    ||||| |||||||||||||||| || ||| ||| |||| |||| |  ||||||||  |||| || ||||||||||| |||||||||||||||||| ||||    
T  29424175 caatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatc 29424076  T
Q  145 cttaatcgattctcacaaattcatcaaccttcacctccaaaattccctcaat 196  Q
      |||||||||| ||||  |||||||| ||||||||||| |||||| |||||    
T  29424075 tctaatcgattcccacagcttcatcaagcttcacctccataattccttcaat 29424024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 36225681 - 36225490
Alignment:
Q  75 ccgaaatcttctcccgtttaccggttaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaacct 174  Q
    |||||||| ||||||| ||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  175 tcacctc-----caaaattccctcaattttaacctcatcctccgtcgcaaaaccgacctctaccatctccatttccctaacctaaccaccgc 261  Q
    |||||||      |||| ||| |||| || ||||||||||| || |  |||||| | |||||||| ||  ||||||||||||||||||||||    
T  36225581 tcacctcaaaattaaaactccttcaacttcaacctcatccttcgccagaaaaccaaactctaccaacttgatttccctaacctaaccaccgc 36225490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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