View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18892_low_1 (Length: 826)
Name: NF18892_low_1
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18892_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 18 - 818
Target Start/End: Original strand, 31464257 - 31465061
Alignment:
| Q |
18 |
agctaagaggcaaatcaatggatggaccatgggttgattcttccatatcttatccaagtaaagatgagtattcttcaactgataagcttatttgaggctt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464257 |
agctaagaggcaaatcaatggatggaccatgggttgattcttccatatcttatccaagtaaagatgagtattcttcaactgataagcttatttgaggctt |
31464356 |
T |
|
| Q |
118 |
gattgatgtgtggtttgtaagttagagagagatcaattcacattaatacaaattcttttgtaaagtatatatggacaacaacaatattatagagtgaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464357 |
gattgatgtgtggtttgtaagttagagagagatcaattcacattaatacaaattcttttgtaaagtatatatggacaacaacaatattatagagtgaaag |
31464456 |
T |
|
| Q |
218 |
catacttgcaaaaatgtagtgtttgaaatcaagcatgtggttttgaaacgtgtggaagatttccattgctttcttcctgtatattttaaggaatttcatg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464457 |
catacttgcaaaaatgtagtgtttgaaatcaagcatgtggttttgaaacgtgtggaagatttccattgctttcttcctgtatattttaaggaatttcatg |
31464556 |
T |
|
| Q |
318 |
tgttgaacatagttagttattcacaattcctactatgtggatttcttaggaattgaatgatgttagtatgttatgttatccatgctgatttaacaaggaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464557 |
tgttgaacatagttagttattcacaattcctactatgtggatttcttaggaattgaatgatgttagtatgttatgttatccatgctgatttaacaaggaa |
31464656 |
T |
|
| Q |
418 |
ggtttaattgttgggagata--nnnnnnnngtgtaaaccctccagttctcagaggaaaggaggatgagaatgagtttatatagtccaaatgcagatttaa |
515 |
Q |
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||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31464657 |
ggtttaattattgggagatattttttttttgtgttaaccctccagttctcagaggaaaggaggatgagaatgagtttatatagtccagatgcagatttaa |
31464756 |
T |
|
| Q |
516 |
aatcactgtgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagtgtaggtttgcaaattggaacattgtgattctgaagaagaca |
615 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464757 |
aatcactatgagtttgatgaaatcacggtgacacggtgattttgttgaagttctaaagtgtaggtttgcaaattggaacattgtgattctgaagaagaca |
31464856 |
T |
|
| Q |
616 |
aagctaatccaaacatgctcctaggattctataaacatgcatcggctaaaacagacagtgaaatatttgtaatatggttaacat--aatgtattctctat |
713 |
Q |
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| T |
31464857 |
aagctaatccaaacatgctcctaggattctataaacatgcatcggctaaaacagacagtgaaatatttgtaatatggttaacatgaaatgtattctctat |
31464956 |
T |
|
| Q |
714 |
cttggcacattcctgatctttaagatgctctctctccacgcattcctatatcctttgtagttcttgtttttgcttcattctctccgcgcaaggattcctt |
813 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464957 |
cttggcacattcctgatctttaagatgctctctctccacgcattcctatatcttttgtagttcttgtttttgcttcattctctccgcgcaaggattcctc |
31465056 |
T |
|
| Q |
814 |
catat |
818 |
Q |
| |
|
||||| |
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|
| T |
31465057 |
catat |
31465061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 527 - 578
Target Start/End: Original strand, 14570513 - 14570564
Alignment:
| Q |
527 |
gtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagtgtag |
578 |
Q |
| |
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|||||||||||||||||||||| | |||||||||| |||||||||| ||||| |
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| T |
14570513 |
gtttgatgaaatcacggtgacacgttgattttgttaaagttctaaattgtag |
14570564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 480 - 749
Target Start/End: Complemental strand, 39279823 - 39279540
Alignment:
| Q |
480 |
tgagaatgagtttatatagtccaaatgcagatttaaaatcactgtgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagtgtagg |
579 |
Q |
| |
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||||||||| |||||||||||| | |||| |||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39279823 |
tgagaatgaatttatatagtcctagtgcatatttggaatcacggtgattttgacgaaatcacggtgacacggtgattttgttgaagttctaaagtgtagt |
39279724 |
T |
|
| Q |
580 |
tttgc--aaat-----tggaacattgtgattctgaagaagacaaagctaatccaaacatgctcctaggattctataaacatgcatcggctaaaacagaca |
672 |
Q |
| |
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||||| |||| ||| | | || ||||| ||| || | |||||||| ||| |||||||||| | | ||||| | |||| |||||| |||||| |
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| T |
39279723 |
tttgccaaaatcataatggcagactgggattccgaaaaacatgaagctaataaaaaaatgctcctagaagtttataagaaggcattggctaagacagacc |
39279624 |
T |
|
| Q |
673 |
gtgaaatatttgta-----atatggttaacat--aatgtattctctatcttggcacattcctgatctttaagatgctctctctc |
749 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||| |
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|
| T |
39279623 |
atgaaatatttgtaatattatatagttaacatgaaatgtattctctatcgtggcacatacctgatctttaagacgctctctctc |
39279540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 8091258 - 8091311
Alignment:
| Q |
515 |
aaatcactgtgagtttgatgaaatcacggtgacaaggtgattttgttgaagttc |
568 |
Q |
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||||||| ||| ||||| ||||||||||||||| |||||||||||||||||| |
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| T |
8091258 |
aaatcacattgaatttgaagaaatcacggtgacactgtgattttgttgaagttc |
8091311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 577
Target Start/End: Original strand, 34583692 - 34583745
Alignment:
| Q |
524 |
tgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagtgta |
577 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
34583692 |
tgagtttgatgtaattacggtgacatcgtgatttcgttgaagttctaaagtgta |
34583745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 10478366 - 10478316
Alignment:
| Q |
524 |
tgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagt |
574 |
Q |
| |
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|||||||||| ||||||||||| || |||||||||||||||||| ||||| |
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|
| T |
10478366 |
tgagtttgataaaatcacggtgccaccgtgattttgttgaagttccaaagt |
10478316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 572
Target Start/End: Original strand, 18898608 - 18898657
Alignment:
| Q |
523 |
gtgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaa |
572 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
18898608 |
gtgagcttgatgaaatcacggtgacaccttgattttgttgaagctctaaa |
18898657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 578
Target Start/End: Original strand, 6019567 - 6019622
Alignment:
| Q |
523 |
gtgagtttgatgaaatcacggtgacaaggtgattttgttgaagttctaaagtgtag |
578 |
Q |
| |
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||||||| || |||||| |||||||| ||||||||||||||||| |||||||||| |
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|
| T |
6019567 |
gtgagttggacgaaatcgtggtgacaacgtgattttgttgaagttataaagtgtag |
6019622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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