View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18892_low_2 (Length: 673)

Name: NF18892_low_2
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18892_low_2
NF18892_low_2
[»] chr3 (2 HSPs)
chr3 (1-659)||(34760214-34760872)
chr3 (580-651)||(43815350-43815421)
[»] chr4 (2 HSPs)
chr4 (257-476)||(43729430-43729649)
chr4 (578-657)||(43729763-43729842)
[»] chr5 (2 HSPs)
chr5 (287-367)||(14497544-14497624)
chr5 (606-636)||(14497849-14497879)
[»] chr8 (3 HSPs)
chr8 (580-651)||(29215280-29215351)
chr8 (326-378)||(29245697-29245749)
chr8 (607-651)||(29253757-29253801)
[»] chr2 (2 HSPs)
chr2 (132-178)||(35223743-35223789)
chr2 (326-367)||(30919603-30919644)


Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Original strand, 34760214 - 34760872
Alignment:
Q  1 gaatgaaagaaaaattagaggcaaagattttcctcgtaaatgaatgcacaatttggattgttaacgcaactaaaaaacacaattaaccataatttacaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760214 gaatgaaagaaaaattagaggcaaagattttcctcgtaaatgaatgcacaatttggattgttaacgcaactaaaaaacacaattaaccataatttacaac 34760313  T
Q  101 atgattaatcatatattcaaattgtgttgaccatccaaattgttgttgaaatttactgtcaaatttatgtgtaaaaatatcattgaggttactgttttct 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34760314 atgattaatcatatattcaaattgtgctaaccatccaaattgttgttgaaatttactgtcaaatttatgtgtaaaaatatcattgaggttactattttct 34760413  T
Q  201 aaatatcttaaactttgatattgaatttgaaggcactgacctcatgatcactactagttgaatctctccgaacaggttttggtttccttccaaatctttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760414 aaatatcttaaactttgatattgaatttgaaggcactgacctcatgatcactactagttgaatctctccgaacaggttttggtttccttccaaatctttt 34760513  T
Q  301 gatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttccttctggacattcttcaccagaatcagtccacaactgtaacctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760514 gatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttccttctggacattcttcaccagaatcagtccacaactgtaacctc 34760613  T
Q  401 tcactaaccttttctccattgttgtagtatccatttggcctttctggtggatcctgtaaaccttaaccctcttactttctgtctctcaaataaactaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760614 tcactaaccttttctccattgttgtagtatccatttggcctttctggtggatcctgtaaaccttaaccctcttactttctgtctctcaaataaactaaaa 34760713  T
Q  501 atctcaatgcctaatttataaatcttagttcaaattaatgcaaagtcattttgtatgcttgagtagttattgaaattattaccaatggtttatgcccttt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34760714 atctcaatgcctaatttataaatcttagttcaaattaatgcaaagtcattttgtatgcttgagtggttattgaaattattaccaatggtttatgcccttt 34760813  T
Q  601 aagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcac 659  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34760814 aagcttaggatgatcaaaagctggttgatgatgagataaaatacaatctatcaaatcac 34760872  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 651
Target Start/End: Original strand, 43815350 - 43815421
Alignment:
Q  580 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctat 651  Q
    |||||||||||| |||||||| |    ||||||||||||||||||||||| ||| | ||||| |||||||||    
T  43815350 taccaatggtttttgccctttcaataaaggatgatcaaaagctggttgtttatgcgttaaaacacaatctat 43815421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 257 - 476
Target Start/End: Original strand, 43729430 - 43729649
Alignment:
Q  257 gttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttc 356  Q
    ||||| |||||||| |||  | ||||||| |||||||||||| | || || |||||||| |||| ||| | |||||||||||||||||||||||||||||    
T  43729430 gttgagtctctccgtacacctcttggttttcttccaaatcttcttatggagcttgctctaagaaaatcttgttctgttgttcttctgattggaacagttc 43729529  T
Q  357 cttctggacattcttcaccagaatcagtccacaactgtaacctctcactaaccttttctccattgttgtagtatccatttggcctttctggtggatcctg 456  Q
    |||  ||||||||||||||||||||| |||| | ||| ||  | |   |  | ||||||||||| |||| ||| || |||||||||||||||||||||||    
T  43729530 ctttaggacattcttcaccagaatcaatccaaagctgaaagttatttgttgcattttctccattcttgttgtacccttttggcctttctggtggatcctg 43729629  T
Q  457 taaaccttaaccctcttact 476  Q
    |||||||||| |||||||||    
T  43729630 taaaccttaagcctcttact 43729649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 657
Target Start/End: Original strand, 43729763 - 43729842
Alignment:
Q  578 attaccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatc 657  Q
    |||||||||||||| || ||||| ||    ||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  43729763 attaccaatggtttttgtcctttgagtagtggatggtcaaaagctggttgttgatgagatataatacaatctatcaaatc 43729842  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 14497544 - 14497624
Alignment:
Q  287 cttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttccttctggacat 367  Q
    ||||||||| | |||||||||||||| ||||  || || | ||||||||||||||| || ||||  |||||||||||||||    
T  14497544 cttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacat 14497624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 636
Target Start/End: Original strand, 14497849 - 14497879
Alignment:
Q  606 taggatgatcaaaagctggttgttgatgaga 636  Q
    |||||||||||||||||||||||||||||||    
T  14497849 taggatgatcaaaagctggttgttgatgaga 14497879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 651
Target Start/End: Original strand, 29215280 - 29215351
Alignment:
Q  580 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctat 651  Q
    |||||||||||| || ||| | | | |||||||||||||||| ||||||| |||||||| || |||||||||    
T  29215280 taccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctat 29215351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 29245749 - 29245697
Alignment:
Q  326 tcttctgttgttcttctgattggaacagttccttctggacattcttcaccaga 378  Q
    ||||||||||||||||| |||||||  |||||||| ||||||  |||||||||    
T  29245749 tcttctgttgttcttctaattggaattgttccttcaggacatgattcaccaga 29245697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 651
Target Start/End: Complemental strand, 29253801 - 29253757
Alignment:
Q  607 aggatgatcaaaagctggttgttgatgagataaaatacaatctat 651  Q
    ||||||||||||||||||||||| |||||| | || |||||||||    
T  29253801 aggatgatcaaaagctggttgtttatgagacataacacaatctat 29253757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 35223743 - 35223789
Alignment:
Q  132 catccaaattgttgttgaaatttactgtcaaatttatgtgtaaaaat 178  Q
    |||||||||| ||||||||||||| |||||||||||| ||| |||||    
T  35223743 catccaaatttttgttgaaatttattgtcaaatttatttgtcaaaat 35223789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 30919603 - 30919644
Alignment:
Q  326 tcttctgttgttcttctgattggaacagttccttctggacat 367  Q
    |||||| |||||||||| |||||||||| |||||||||||||    
T  30919603 tcttcttttgttcttctaattggaacagatccttctggacat 30919644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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