View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18892_low_3 (Length: 611)
Name: NF18892_low_3
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18892_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Complemental strand, 4196217 - 4195636
Alignment:
| Q |
16 |
tcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196217 |
tcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaac |
4196118 |
T |
|
| Q |
116 |
atgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196117 |
atgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaac |
4196018 |
T |
|
| Q |
216 |
agagccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196017 |
agagccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacaca |
4195918 |
T |
|
| Q |
316 |
taacaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195917 |
taacaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaa |
4195818 |
T |
|
| Q |
416 |
gaacttggaggaaacaacnnnnnnnggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccac |
515 |
Q |
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| T |
4195817 |
gaacttggaggaaacaacaaaaaaaggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccac |
4195718 |
T |
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| Q |
516 |
cattcaatgcttataccagcaagaacattaccagaaagaatctgcataaactgattccatttccggttaaccataacctgat |
597 |
Q |
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| T |
4195717 |
cattcaatgcttataccagcaagaacattaccagaaagaatctgcataaactgattccatttccggttaaccataacctgat |
4195636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 4187183 - 4186642
Alignment:
| Q |
18 |
acatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacat |
117 |
Q |
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||||||||||| ||| || ||||||||||||||||||||| | || ||| |||||| ||| ||||| || ||||||||||| ||||| |||||||||| |
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| T |
4187183 |
acatcaagagtcccactagtttgcttctcaaaccaatcatgcgatgttggttgaccaatatagacacttgcagaaaaatgattgaaagtgaactgaacat |
4187084 |
T |
|
| Q |
118 |
gttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaacag |
217 |
Q |
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||||||| ||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4187083 |
gttgaataccagtcacagaaaaactagcaattacaaacaaaactctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaacac |
4186984 |
T |
|
| Q |
218 |
agccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacacata |
317 |
Q |
| |
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| ||| || |||||||| ||||||||||| || ||||| |||||||| | | ||| || |||||| ||||||||||||| | |||||| ||||| ||| |
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| T |
4186983 |
aagcaaacccaaaagttctatctttctattgggaactttcctattagacagtagcaagaaaaaagatcgagcaaacaaattgaacctagctaaacatata |
4186884 |
T |
|
| Q |
318 |
acaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaaga |
417 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||| |||||||| |||| |
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| T |
4186883 |
ccaggacaataactccaatgttggtaactaaccaagaacctagcaaaagaatcaaagttcatcttcctatcatgaaaacaagaagtgagtgaagtaaaga |
4186784 |
T |
|
| Q |
418 |
acttggaggaaacaacnnnnnnnggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccacca |
517 |
Q |
| |
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|||| || || ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
4186783 |
actttgaagagacaacaaaaaagggtaaatgttgaaggtcagggtcaaaatcaagactattacaagcaaggtggtgtgcattgtggttccatttccacca |
4186684 |
T |
|
| Q |
518 |
ttcaatgcttataccagcaagaacattaccagaaagaatctg |
559 |
Q |
| |
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|| |||||||||| || ||||| ||| |||||||| ||||| |
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| T |
4186683 |
ctccatgcttatactagaaagaaaatttccagaaaggatctg |
4186642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 455 - 534
Target Start/End: Original strand, 24417348 - 24417427
Alignment:
| Q |
455 |
atcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccaccattcaatgcttataccag |
534 |
Q |
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|||||||||| ||||||||||||| ||||||| ||| || ||||||||| ||||||||||||| |||| |||||||||| |
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| T |
24417348 |
atcaggatcataatcaagactattgcaagcaatatgatgagcattatgagtccatttccaccaagcaatacttataccag |
24417427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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