View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18892_low_5 (Length: 475)
Name: NF18892_low_5
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18892_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 463
Target Start/End: Complemental strand, 29007046 - 29006608
Alignment:
| Q |
22 |
ttagttatacctggaaagttagcgaagaaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagtga--gagagagaggatgagaaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
29007046 |
ttagttatacctggaaagttagcgaagaaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagggatagagagagaggttgagaaat |
29006947 |
T |
|
| Q |
120 |
gaaagaaaatggaagttgaagaagtcctttatttcaaaatgttgttagtttgaaggaagagtggaagacttgacgtggccacacacgattggttggtggg |
219 |
Q |
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| T |
29006946 |
gaaagaaaatggaagttgaagaagtcctttatttcaaaatgttgtta-tttgaaggaagaatggaagacttgacgtggccacacgcgattggttggtggg |
29006848 |
T |
|
| Q |
220 |
ttcgggagtctagtctaagatacgtgtgcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatcaa |
319 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006847 |
ttggggagtctagtctaagatacgtgtgcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatca- |
29006749 |
T |
|
| Q |
320 |
ctactatcatcacgactcagtctagaatgcgtaggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatcc |
419 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006748 |
--actatcatcacgactcagtctagaatgcataggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatcc |
29006651 |
T |
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| Q |
420 |
ctattgtcgtcaatttttatgattttttatttatgctagatatt |
463 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29006650 |
ctattgtcgtcaatttttatga-tttttatttatgctagatatt |
29006608 |
T |
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