View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18892_low_6 (Length: 449)

Name: NF18892_low_6
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18892_low_6
NF18892_low_6
[»] chr5 (14 HSPs)
chr5 (21-201)||(38220859-38221036)
chr5 (194-292)||(38178476-38178574)
chr5 (194-292)||(38205700-38205798)
chr5 (209-290)||(38221020-38221101)
chr5 (209-290)||(38156691-38156772)
chr5 (24-119)||(38186211-38186306)
chr5 (24-119)||(38212051-38212146)
chr5 (370-432)||(38156768-38156830)
chr5 (370-432)||(38221097-38221159)
chr5 (21-201)||(38156537-38156707)
chr5 (366-420)||(38178405-38178456)
chr5 (366-420)||(38205629-38205680)
chr5 (26-120)||(38444050-38444144)
chr5 (318-369)||(26032753-26032807)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 38220859 - 38221036
Alignment:
Q  21 atggtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaattt 120  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220859 atggtcattaacaatatgcatttggttgataaaatat--gtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaattt 38220956  T
Q  121 tactgctctatggatgtacctatgtttgttatggaagttaaaagaaattggtaaatggtcactattatggaagtgaaattt 201  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  38220957 tactgctctatggaagtacctatgtttgttatggaagttaaaagaaattggt-aatggtcactattatgaaagtgaaattt 38221036  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 38178574 - 38178476
Alignment:
Q  194 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178574 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 38178476  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 38205798 - 38205700
Alignment:
Q  194 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38205798 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 38205700  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 38221020 - 38221101
Alignment:
Q  209 ttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38221020 ttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 38221101  T

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Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 38156691 - 38156772
Alignment:
Q  209 ttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 290  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156691 ttatggaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 38156772  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 38186211 - 38186306
Alignment:
Q  24 gtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||| |||   ||||||||||    
T  38186211 gtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt 38186306  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 38212146 - 38212051
Alignment:
Q  24 gtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||| |||   ||||||||||    
T  38212146 gtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt 38212051  T

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Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 38156768 - 38156830
Alignment:
Q  370 aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgtt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156768 aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgtt 38156830  T

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Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 38221097 - 38221159
Alignment:
Q  370 aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgtt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38221097 aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgtt 38221159  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 38156537 - 38156707
Alignment:
Q  21 atggtcattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaattt 120  Q
    |||| |||||||||| |  |||||||| ||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||  |||  |||| ||||||    
T  38156537 atggccattaacaatttaaatttggttaataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattt 38156636  T
Q  121 tactgctctatggatgtacctatgtttgttatggaagttaaaagaaattggtaaatggtcactattatggaagtgaaattt 201  Q
    ||||||||||          |||||||||||||||||| |       ||||||||||||||||||||||||||||||||||    
T  38156637 tactgctcta----------tatgtttgttatggaagtaatttttttttggtaaatggtcactattatggaagtgaaattt 38156707  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 38178456 - 38178405
Alignment:
Q  366 agaaaactacggcgatattattgtgcattgttagtcaaattagtataactctttc 420  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  38178456 agaaaactacggcgatatt---gtgcattgttagtcaaattagtataactctttc 38178405  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 38205680 - 38205629
Alignment:
Q  366 agaaaactacggcgatattattgtgcattgttagtcaaattagtataactctttc 420  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  38205680 agaaaactacggcgatatt---gtgcattgttagtcaaattagtataactctttc 38205629  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 38444050 - 38444144
Alignment:
Q  26 cattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaattt 120  Q
    ||||| |||| || |||||||||||||| | | ||| ||||| | ||||||||| | ||||||||||||||||| || |||   |||||||||||    
T  38444050 cattagcaatttgaatttggttgataaattttgtgtttatattttaaattaacacataacaaatgaaatcaatgcatgttatggaagtgaaattt 38444144  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 26032807 - 26032753
Alignment:
Q  318 atgctaggcatgtgcatttgtctgagaccaatttcgt---tgaaaaagggaagaa 369  Q
    ||||||||| |||| ||||||||||||| ||||||||   |||||||||||||||    
T  26032807 atgctaggcgtgtgtatttgtctgagacaaatttcgttgatgaaaaagggaagaa 26032753  T

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