View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18892_low_7 (Length: 444)
Name: NF18892_low_7
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18892_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 4196217 - 4195806
Alignment:
| Q |
16 |
tcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196217 |
tcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaac |
4196118 |
T |
|
| Q |
116 |
atgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196117 |
atgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaac |
4196018 |
T |
|
| Q |
216 |
agagccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196017 |
agagccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacaca |
4195918 |
T |
|
| Q |
316 |
taacaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195917 |
taacaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaa |
4195818 |
T |
|
| Q |
416 |
gaacttggagga |
427 |
Q |
| |
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|||||||||||| |
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| T |
4195817 |
gaacttggagga |
4195806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 4187183 - 4186780
Alignment:
| Q |
18 |
acatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacat |
117 |
Q |
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||||||||||| ||| || ||||||||||||||||||||| | || ||| |||||| ||| ||||| || ||||||||||| ||||| |||||||||| |
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| T |
4187183 |
acatcaagagtcccactagtttgcttctcaaaccaatcatgcgatgttggttgaccaatatagacacttgcagaaaaatgattgaaagtgaactgaacat |
4187084 |
T |
|
| Q |
118 |
gttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaacag |
217 |
Q |
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||||||| ||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4187083 |
gttgaataccagtcacagaaaaactagcaattacaaacaaaactctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatccaaaacac |
4186984 |
T |
|
| Q |
218 |
agccaaccctaaaagttccatctttctattaggcacttttctattagaaaacaacaaaaagaaagattgagcaaacaaattaagcctagcaaaacacata |
317 |
Q |
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| ||| || |||||||| ||||||||||| || ||||| |||||||| | | ||| || |||||| ||||||||||||| | |||||| ||||| ||| |
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| T |
4186983 |
aagcaaacccaaaagttctatctttctattgggaactttcctattagacagtagcaagaaaaaagatcgagcaaacaaattgaacctagctaaacatata |
4186884 |
T |
|
| Q |
318 |
acaggataataactccaatgctggtaactaaccaagaacctagcaaaagaatcaaaattcatctttcttccataaaaacaagaagttagtgaagtgaaga |
417 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||| |||||||| |||| |
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| T |
4186883 |
ccaggacaataactccaatgttggtaactaaccaagaacctagcaaaagaatcaaagttcatcttcctatcatgaaaacaagaagtgagtgaagtaaaga |
4186784 |
T |
|
| Q |
418 |
actt |
421 |
Q |
| |
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|||| |
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|
| T |
4186783 |
actt |
4186780 |
T |
|
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