View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18892_low_8 (Length: 362)

Name: NF18892_low_8
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18892_low_8
NF18892_low_8
[»] chr8 (10 HSPs)
chr8 (12-346)||(24883292-24883626)
chr8 (100-206)||(25672034-25672140)
chr8 (100-204)||(25465028-25465132)
chr8 (100-159)||(25568461-25568520)
chr8 (100-210)||(25288363-25288480)
chr8 (100-210)||(25299700-25299817)
chr8 (300-336)||(25334936-25334972)
chr8 (12-63)||(25288539-25288590)
chr8 (12-63)||(25299876-25299927)
chr8 (100-134)||(25438690-25438724)
[»] scaffold1493 (2 HSPs)
scaffold1493 (100-210)||(289-406)
scaffold1493 (12-63)||(179-230)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 24883292 - 24883626
Alignment:
Q  12 aattctacagaagatccaatcaagtagtagaatcctttaaaacattgatagggaaaagatggcttgtgtcaatactgaaacgatgtttaacaaaactcag 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883292 aattcttcagaagatccaatcaagtagtagaatcctttaaaacattgatagggaaaagatggcttgtgtcaatactgaaacgatgtttaacaaaactcag 24883391  T
Q  112 tgaaaatatcaaaccacttaagagacacagatcagacattttataacagccaaaagtgggcagactatattattgcggccacgatgggttacttccgagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883392 tgaaaatatcaaaccacttaagagacacagatcagacattttatagcaaccaaaagtgggcagactatattattgcggccacgatgggttacttccgagg 24883491  T
Q  212 cccataaatatatgatgggcagactatatcatcactaattagaagaaagatgcaagcccgtaaatatatgatgaccacgnnnnnnnnnagaagctagatc 311  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||||    
T  24883492 cccataaatatatgatgggaagactatatcatcactaattagaagaaagatgcaagcccgtaaatatataatgaccacatttttttttagaagctagatc 24883591  T
Q  312 aaaatattagaggacaatgtataccagaataaatt 346  Q
    |||||||||||||||||||||||||||||||||||    
T  24883592 aaaatattagaggacaatgtataccagaataaatt 24883626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 25672140 - 25672034
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagacacagatcagacattttataacagccaaaagtgggcagactatattattgcggccacgatggg 199  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||| || |||||||||||| |||||| |||||    
T  25672140 aacaaatctcagtgaaaatatcaaaccacttaagagacatagatcatacattttaaaacaaccaaaagtggacaaactatattattgaggccacaatggg 25672041  T
Q  200 ttacttc 206  Q
    |||||||    
T  25672040 ttacttc 25672034  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 25465132 - 25465028
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagacacagatcagacattttataacagccaaaagtgggcagactatattattgcggccacgatggg 199  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||  ||| |||| |||||||||| || |||||||||||| |||||| |||||    
T  25465132 aacaaatctcagtgaaaatatcaaaccacttaagagacatagatcaaacaaattaaaacaaccaaaagtggacaaactatattattgaggccacaatggg 25465033  T
Q  200 ttact 204  Q
    |||||    
T  25465032 ttact 25465028  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 25568520 - 25568461
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagacacagatcagacattttataaca 159  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  25568520 aacaaatctcagtgaaaatatcaaaccacttaagagacacaaatcagacatattaaaaca 25568461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 25288480 - 25288363
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagac-----acagatcagacattttataacagccaaaagtgggcaga--ctatattattgcggcca 192  Q
    |||||| |||||||||||||||||||||||||||| |      ||||||||||||||||   |||||||||||||  ||||  ||||||||| | |||||    
T  25288480 aacaaatctcagtgaaaatatcaaaccacttaagataagatagacagatcagacattttgacacagccaaaagtgaacagactctatattatcgaggcca 25288381  T
Q  193 cgatgggttacttccgag 210  Q
      ||||||||||||||||    
T  25288380 aaatgggttacttccgag 25288363  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 25299817 - 25299700
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagac-----acagatcagacattttataacagccaaaagtgggcagact--atattattgcggcca 192  Q
    |||||| |||||||||||||||||||||||||||| |      ||||||||||||||||   ||| |||||||||  ||||||  ||||||| | |||||    
T  25299817 aacaaatctcagtgaaaatatcaaaccacttaagataagatagacagatcagacattttgacacaaccaaaagtgaacagactctatattatcgaggcca 25299718  T
Q  193 cgatgggttacttccgag 210  Q
    | ||||||||||||||||    
T  25299717 caatgggttacttccgag 25299700  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 25334972 - 25334936
Alignment:
Q  300 agaagctagatcaaaatattagaggacaatgtatacc 336  Q
    |||||||||||||||||||||||||||||||||||||    
T  25334972 agaagctagatcaaaatattagaggacaatgtatacc 25334936  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 25288590 - 25288539
Alignment:
Q  12 aattctacagaagatccaatcaagtagtagaatcctttaaaacattgatagg 63  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| || |||||    
T  25288590 aattctacagaagacccattcaagtagtggaatcctttaaaactttaatagg 25288539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 25299927 - 25299876
Alignment:
Q  12 aattctacagaagatccaatcaagtagtagaatcctttaaaacattgatagg 63  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| || |||||    
T  25299927 aattctacagaagacccattcaagtagtggaatcctttaaaactttaatagg 25299876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 25438724 - 25438690
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaaga 134  Q
    |||||| ||||||||||||||||||||||||||||    
T  25438724 aacaaatctcagtgaaaatatcaaaccacttaaga 25438690  T

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Target: scaffold1493 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 289 - 406
Alignment:
Q  100 aacaaaactcagtgaaaatatcaaaccacttaagagac-----acagatcagacattttataacagccaaaagtgggcaga--ctatattattgcggcca 192  Q
    |||||| |||||||||||||||||||||||||||| |      ||||||||||||||||   |||||||||||||  ||||  ||||||||| | |||||    
T  289 aacaaatctcagtgaaaatatcaaaccacttaagataagatagacagatcagacattttgacacagccaaaagtgaacagactctatattatcgaggcca 388  T
Q  193 cgatgggttacttccgag 210  Q
      ||||||||||||||||    
T  389 aaatgggttacttccgag 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 179 - 230
Alignment:
Q  12 aattctacagaagatccaatcaagtagtagaatcctttaaaacattgatagg 63  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| || |||||    
T  179 aattctacagaagacccattcaagtagtggaatcctttaaaactttaatagg 230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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