View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18892_low_9 (Length: 335)

Name: NF18892_low_9
Description: NF18892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18892_low_9
NF18892_low_9
[»] chr2 (2 HSPs)
chr2 (113-317)||(29350636-29350841)
chr2 (2-68)||(29350829-29350895)
[»] chr8 (5 HSPs)
chr8 (1-69)||(4030375-4030443)
chr8 (65-115)||(4031577-4031627)
chr8 (57-115)||(12195684-12195742)
chr8 (57-115)||(12440112-12440170)
chr8 (54-114)||(15349244-15349304)
[»] chr3 (3 HSPs)
chr3 (4-115)||(11015081-11015192)
chr3 (4-114)||(11024093-11024203)
chr3 (26-114)||(11005540-11005628)
[»] chr4 (25 HSPs)
chr4 (48-115)||(49038512-49038579)
chr4 (54-115)||(45371714-45371775)
chr4 (38-114)||(7790441-7790517)
chr4 (54-115)||(7878743-7878804)
chr4 (38-115)||(48147337-48147414)
chr4 (54-115)||(48853041-48853102)
chr4 (54-115)||(48864395-48864456)
chr4 (38-115)||(49043792-49043869)
chr4 (54-114)||(7908663-7908723)
chr4 (54-114)||(7786825-7786885)
chr4 (57-115)||(48156072-48156130)
chr4 (4-114)||(48870921-48871031)
chr4 (4-114)||(48876225-48876335)
chr4 (56-114)||(50666676-50666734)
chr4 (57-110)||(7237386-7237439)
chr4 (54-115)||(7773465-7773526)
chr4 (56-105)||(37826632-37826681)
chr4 (54-115)||(45384532-45384593)
chr4 (54-114)||(7766003-7766063)
chr4 (54-110)||(7771760-7771816)
chr4 (54-114)||(7813838-7813898)
chr4 (36-114)||(48886607-48886685)
chr4 (48-114)||(48903316-48903382)
chr4 (54-111)||(50669446-50669503)
chr4 (54-114)||(7800998-7801058)
[»] chr5 (4 HSPs)
chr5 (54-116)||(42561973-42562035)
chr5 (29-115)||(9120123-9120209)
chr5 (71-115)||(179418-179462)
chr5 (23-115)||(29688489-29688581)
[»] chr6 (2 HSPs)
chr6 (38-115)||(21016181-21016258)
chr6 (68-108)||(14197337-14197377)
[»] chr7 (1 HSPs)
chr7 (54-115)||(48884184-48884245)
[»] chr1 (5 HSPs)
chr1 (54-115)||(24416138-24416199)
chr1 (54-109)||(24367531-24367586)
chr1 (54-115)||(24340771-24340832)
chr1 (54-115)||(24353136-24353197)
chr1 (54-106)||(24323139-24323191)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 113 - 317
Target Start/End: Complemental strand, 29350841 - 29350636
Alignment:
Q  113 aacaagagtcttattgaaaatttagagggggcacatgcccacattcttttggttgtgcatccgtccccc-tggtagaaggatatgaaagtttaccaattg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29350841 aacaagagtcttattgaaaatttagagggggcacatgcccacattcttttggttgtgcatccgtcccccctggtagaaggatatgaaagtttaccaattg 29350742  T
Q  212 gcttgcattccaagtgttcattatcagatataaaaaatatatgcaatacttcctttcacaaatgaaaattcctttctcagagggtgctacttcaaggcat 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29350741 gcttgcattccaagtgtttattatcagatataaaaaatatatgcaatacttcctttcacaaatgaaaattcctttctcagagggtgctacttcaaggcat 29350642  T
Q  312 aatatg 317  Q
    ||||||    
T  29350641 aatatg 29350636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 29350895 - 29350829
Alignment:
Q  2 tattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtctta 68  Q
    |||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||    
T  29350895 tattgtagagcacattggggcaaaatacttattggaaatgccatcaatagacagaacaagagtctta 29350829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4030375 - 4030443
Alignment:
Q  1 ttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttag 69  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4030375 ttattgtagagcacattggggaaaagtacttaatggaaatgccatcaatagacagaacaagagtcttag 4030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 4031577 - 4031627
Alignment:
Q  65 cttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12195742 - 12195684
Alignment:
Q  57 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||||||||||||||| ||   |||| ||||||||||  |||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12195684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12440170 - 12440112
Alignment:
Q  57 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||||||||||||||| ||   |||| ||||||||||  |||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||| |||| |||||||| || | || |||| |||||||||| |||||||||||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 11015081 - 11015192
Alignment:
Q  4 ttgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataac 103  Q
    |||||||||| ||||||| | | |||| ||||||||||||||| ||||| || |||||||| |||  |||||| ||||||| |||| |||||||||||||    
T  11015081 ttgtagagcatattgggggataatactcaatggaaatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataac 11015180  T
Q  104 ccatatttcaac 115  Q
    ||||||||||||    
T  11015181 ccatatttcaac 11015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 11024093 - 11024203
Alignment:
Q  4 ttgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataac 103  Q
    |||||||||| ||||||| |   |||| |||| |||||| ||| ||||| || |||||||||||||||||||| ||||||| |||| |||||||||||||    
T  11024093 ttgtagagcatattgggggatcatactgaatgtaaatgtaatcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataac 11024192  T
Q  104 ccatatttcaa 114  Q
    |||||||||||    
T  11024193 ccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 11005540 - 11005628
Alignment:
Q  26 gtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||| |||| ||||| |||| ||||| |  ||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  11005540 gtactgaatgcaaatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 49038512 - 49038579
Alignment:
Q  48 atagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||||||| ||||||||||||||    
T  49038512 atagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 45371714 - 45371775
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaac 45371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 7790517 - 7790441
Alignment:
Q  38 aatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    |||| |||| ||||| ||||||||||| ||||||||||| ||||||| |||| |||||||||| |||||||||||||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 7878804 - 7878743
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||| ||| ||||||||||||||| |||| |||||||||| ||||||||||||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaac 7878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 48147337 - 48147414
Alignment:
Q  38 aatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||| |||| ||||||| |  |||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  48147337 aatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 48853102 - 48853041
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||||||||||||||| ||| ||| |||| |||||||||| ||||||||||||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaac 48853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 48864456 - 48864395
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  48864456 agaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 49043792 - 49043869
Alignment:
Q  38 aatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||| |||| ||||| | |||||||||||||||||| || ||||||| |||| |||||||||| ||||||||||||||    
T  49043792 aatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||| ||| ||||||||||||||| |||| |||||||||| |||||||||||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||||||| |||||||| ||||||  ||| |||||||||| |||||||||||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 48156072 - 48156130
Alignment:
Q  57 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||||| ||||||||||| ||||||| |||| |||| ||||| ||||||||||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 48871031 - 48870921
Alignment:
Q  4 ttgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataac 103  Q
    ||||| |||||| ||||| |||| ||| |  |||||||||||| | ||| |||||||||||||| |||||||| || | || |||| |||| ||||| ||    
T  48871031 ttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcac 48870932  T
Q  104 ccatatttcaa 114  Q
    ||| |||||||    
T  48870931 ccacatttcaa 48870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 48876335 - 48876225
Alignment:
Q  4 ttgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataac 103  Q
    ||||| |||||| ||||| |||| ||| |  |||||||||||| | ||| |||||||||||||| |||||||| || | || |||| |||| ||||| ||    
T  48876335 ttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcac 48876236  T
Q  104 ccatatttcaa 114  Q
    ||| |||||||    
T  48876235 ccacatttcaa 48876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 50666734 - 50666676
Alignment:
Q  56 aacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||| ||||||||||||||||||| |||| |||||| ||| ||||||| |||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaa 50666676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 7237386 - 7237439
Alignment:
Q  57 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatt 110  Q
    |||||||| ||||||||| | |||||||||||| |||||||||| |||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 7773465 - 7773526
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||  ||| ||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaac 7773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  56 aacaagagtcttagtccaagatgaatgcattttgcattctttcataaccc 105  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||| ||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 45384532 - 45384593
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||| ||||||| |||||||| ||||||| |||  |||||||||| ||||||||||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    |||||||| ||||||||||| || |||| || |||| |||||||||| |||||||||||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 7771816 - 7771760
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatt 110  Q
    ||||||||||| |||||||| || ||||||| |||| |||||||||| |||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||| ||| ||||||| ||||||| |||| |||||||||  |||||||||||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 48886685 - 48886607
Alignment:
Q  36 gaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||| | ||| |||||||||||||| |||||||| || | || |||| |||| ||||| ||||| |||||||    
T  48886685 gaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 48903382 - 48903316
Alignment:
Q  48 atagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||||  | | |||||||||||  |||||| |||| |||||||||| |||||||||||||    
T  48903382 atagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 50669503 - 50669446
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatattt 111  Q
    |||| ||||||||||||||||||||||||||  ||| | |||||||| ||||| ||||    
T  50669503 agaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacattt 50669446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 114  Q
    ||||||||||| ||| ||||||| ||||||| |||| | |||||||  |||||||||||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 42561973 - 42562035
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaaca 116  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaaca 42562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 9120209 - 9120123
Alignment:
Q  29 cttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||| |||||||| | || ||||||| ||||||||| ||  ||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  9120209 cttagtggaaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaac 9120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 179462 - 179418
Alignment:
Q  71 ccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaac 179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 29688581 - 29688489
Alignment:
Q  23 aaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||| | ||||| ||||||| | | ||| ||||| |||||||| |||||||| || ||||  ||| ||| |||||| ||||||||||||||    
T  29688581 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaac 29688489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 21016258 - 21016181
Alignment:
Q  38 aatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||| ||||| | |  |||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||    
T  21016258 aatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  68 agtccaagatgaatgcattttgcattctttcataacccata 108  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 48884245 - 48884184
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    |||||||||||||||||||||||   ||||| |||| |||||||||| ||| ||||||||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 24416199 - 24416138
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||| |||||||||||||| |||  |||| |||||||||| |||||||| |||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaac 24416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatat 109  Q
    ||||||||||| ||||||||||| ||||||| |||| |||||| ||| ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 24340832 - 24340771
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||| |||||||||||||| |||| |||  |||||||||| ||||| || |||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 24353197 - 24353136
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 115  Q
    ||||||||||| |||||||||||||| |||| |||  |||||||||| ||||| || |||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 24323191 - 24323139
Alignment:
Q  54 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataaccca 106  Q
    ||||||||||| |||||| ||||||| |||| |||| |||||||||| |||||    
T  24323191 agaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University