View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_high_1 (Length: 803)
Name: NF18893_high_1
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 1 - 785
Target Start/End: Complemental strand, 1537661 - 1536879
Alignment:
| Q |
1 |
tttgtctaacgctcaacatcatcttctttcttaagcactgaaggaacttccgcctggtgtttaggacctatgaaaataccagaagacgccatctgacaag |
100 |
Q |
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| T |
1537661 |
tttgtctaacgctcaacatcatcttctttcttaagcactgaaggaacttccgcctggtgtttaggacctatgaaaataccagaagacgccatctgacaag |
1537562 |
T |
|
| Q |
101 |
gaaatatcggaaatcaaaacctgataactataactcatatcaaggcttaagaagaaatgttatagaaaaaatgtagattggataataacatcatcaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1537561 |
gaaatatcggaaatcaaaacctgataactataactcatatcaaggcttaagaagaaatgttatagaaaaaatgtagattggataataacatcatcaagaa |
1537462 |
T |
|
| Q |
201 |
gcatacttcaaacttgatcctaagcataaaagtaatatatagtgttactcaaccaatttagatattacataactattagtatctatctaactatccctga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1537461 |
gcatacttcaaacttgatcctaagcataaaagtaatatatagtgttattcaaccaatttagat--tacataactattagtatctatctaactatccctga |
1537364 |
T |
|
| Q |
301 |
ggaattgatactttgttttctaactttacatgttcacaatcaaaactattgcagataatacattaacataataaacaaaaccagataacacgttacacgt |
400 |
Q |
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| T |
1537363 |
ggaattgatactttgttttttaactttacatgttcacaatcaaaactattgcagataatacattaacataataaacaaaaccagataacacgttacacgt |
1537264 |
T |
|
| Q |
401 |
ttaatcgaatgaggagtaacaaacaagcacattcatcaaaaacacaaagattgatcagacaaattacaacgaaatactaaaaccaattaatccaaatatt |
500 |
Q |
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| T |
1537263 |
ttaatcgaatgaggagtaacaaacaagcacattcatcaaaaacacaaagattgatcagacaaattacaaccaaatactaaaaccaattaatccaaatatc |
1537164 |
T |
|
| Q |
501 |
taaagtatatatctttgttcctatacatctatgttatcacacagttatgacagaagcacgttgagcaaagttaaggattcttggtaacctttgaaggaga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1537163 |
taaagtatatatctttgttcctatacatctatgttatcacacagttatgacagaagcacgttgagcaaagttaagggttcttggtaacctttgaaggaga |
1537064 |
T |
|
| Q |
601 |
aatcaagtccttgtgttgagtggnnnnnnnnatttnnnnnnngcaagtccttatgctaagtggnnnnnnngaaacttcaaagagggttttgtgaaggaat |
700 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1537063 |
aatcaagtccttgtgttgagtggttttttttatttaaaaaaagcaagtccttatgctaagtggttttcttgaaacttcaaagagggttttgtgaaggaat |
1536964 |
T |
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| Q |
701 |
aaatttatgtactataaatcgacaaaggtggactcaattggtaagtagttgattcacttgcaaggtcgactctcccacaagatca |
785 |
Q |
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| T |
1536963 |
aaatttatgtactataagtcgacgaaggtggactcaattggtaagtagttaattcacttgcaaggtcgactctcccacaagatca |
1536879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 46644247 - 46644316
Alignment:
| Q |
144 |
ggcttaagaagaaatgttatagaaaaaatgtagattggataataacatcatcaagaagcatacttcaaacttga |
217 |
Q |
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| T |
46644247 |
ggcttaagaagaaatgttataaaggaaatgtagattag---ataacatcatcaagaa-catacttcaagcttga |
46644316 |
T |
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