View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_high_10 (Length: 415)
Name: NF18893_high_10
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 4246081 - 4246340
Alignment:
| Q |
18 |
ctttgattcaaaaatcaatagaatgacacgtaaatatctccacaatgcgaaaaagaaaaagctagcctttctcaatgcggcataaggagaatcctcctag |
117 |
Q |
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| T |
4246081 |
ctttgattcaaaaatcaatagaatgacacgaaaatatctccacaatgcgaaaaagaaaaagctagcctttctcaatgtggcataaggtgaatcctcctag |
4246180 |
T |
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| Q |
118 |
tttgtgagtttatagaaatcaaaacacaagagaacatgacataacacactgatactcaaattctagctagtcatacataaccctaattcatatcttcaac |
217 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4246181 |
tttgtgagttta--gaaatcaaaacacaagagaatatgacataacacactgatactcaaattctagctagtcatacataacccaaattcatatcttcaac |
4246278 |
T |
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| Q |
218 |
aacaaattcagcaacaaattaagctattaattggtagatgcttcatcatgaggttcattaat |
279 |
Q |
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| T |
4246279 |
aacaaattcagcaacaaattcagctattaattggcagatgcttcatcatgaggttcattaat |
4246340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 4246364 - 4246416
Alignment:
| Q |
345 |
agtataacaggtggcctacaaaaaagaaagttgtatttcttgaattagacaca |
397 |
Q |
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| T |
4246364 |
agtataacaggtggcctacacaaaagaaagttgtatttcttgaattagacaca |
4246416 |
T |
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