View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_high_11 (Length: 358)
Name: NF18893_high_11
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 9644906 - 9645246
Alignment:
| Q |
18 |
agtatggctgggaaccgaaaaccgggtagcataaccaaaatgaaatatggttctacagaaaatgtgttgaaaaaaggtatatgggcgtcaaaaaacaaat |
117 |
Q |
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| T |
9644906 |
agtatggctgggaaccgaaaaccgggtagcataaccaaaatgaaatatggttctacagaaaatgtgttgaaaaaaggtatatgggcgtcaaaaaacaaat |
9645005 |
T |
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| Q |
118 |
tttctgatggtggtgaaaaagaaaatgagatacaggtgaacacaggcagtgttaaaaccaatgctgatgaagactctaaatttaatagcagcaatgattt |
217 |
Q |
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| T |
9645006 |
tttctgatggtggtgaaaaagaaaatgagatacaggtgaacacaggcagtgttaaaaccaatgctgatgaagactctaaatttaatagcagcaatgattt |
9645105 |
T |
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| Q |
218 |
agaaagcaatgatgtggtctctggatttttatatgataagcttcaaaaagaagtcatcaatttgaggaagacttgtgaaacaaaagacagtactctgcac |
317 |
Q |
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| T |
9645106 |
agaaagcaatgatgtggtctctggatttttatatgataagcttcaaaaagaagtcatcaatttgaagaagacttgtgaaacaaaagacagtactctgcac |
9645205 |
T |
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| Q |
318 |
accaaagatgaagaaataaaggtactggtaacaactatcct |
358 |
Q |
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| T |
9645206 |
accaaagatgaagaaataaaggtactggtaacaactatcct |
9645246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 56008258 - 56008366
Alignment:
| Q |
54 |
aaaatgaaatatggttctacagaaaatgtgttgaaaaaaggtatatgggcgtcaaaaaacaaattttctgatggtggtgaaaaagaaaatgagatacagg |
153 |
Q |
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| T |
56008258 |
aaaatgaaatatacttctgcagaaaacatgttgaagaaaaggatatggacttcaagaagtaaagttgctgatggtggtgaaaaggaaaatgagatacagg |
56008357 |
T |
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| Q |
154 |
tgaacacag |
162 |
Q |
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| T |
56008358 |
tgaacacag |
56008366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 56008492 - 56008590
Alignment:
| Q |
243 |
tttttatatgataagcttcaaaaagaagtcatcaatttgaggaagacttgtgaaacaaaagacagtactctgcacaccaaagatgaagaaataaaggta |
341 |
Q |
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| T |
56008492 |
tttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaagatgaagaaattaaggta |
56008590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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