View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_high_5 (Length: 501)
Name: NF18893_high_5
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 14983728 - 14983446
Alignment:
| Q |
15 |
aatttgaagaattaaaataatggg-taatgataattcaattaattaaactaaatattaaaggagtcaaagtctataattcgaatctaaataaatgataac |
113 |
Q |
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| T |
14983728 |
aatttgaagaattaaaataatggggtaatgataatttaattaattaaactaaatattaaaggagtcaaagtctataattcgaatctaaataaatgataac |
14983629 |
T |
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| Q |
114 |
atgcaaacatctctcattnnnnnnnnnnnnnntagtgatttactcattagtcattgaacacaactcactctcacactcttcactattaaacatatgttag |
213 |
Q |
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| T |
14983628 |
atgcaaacatctctcattaaaaaaattaaaaatagtgatttattcattagtcattgaacacaactcactctaacactcttcactattaaacatatgttag |
14983529 |
T |
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| Q |
214 |
attaggacacatccaaaaacaatagtatccttatcaaaataacatgttctccccgtccttatttcatattccttctctcccat |
296 |
Q |
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| T |
14983528 |
attagaacacatccaaaaacaatagtatccatatcaaaatagtatgttctccccgtccttgtttcatattccctctctcccat |
14983446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 392 - 493
Target Start/End: Complemental strand, 14983354 - 14983253
Alignment:
| Q |
392 |
tataaccattgcatgtttgtcaagatgttatgtgtgaatatgacataaacttaaactccttaacgtgagatattaacacctgtaataaaattatttgatg |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
14983354 |
tataaccattgcatgtttgtcaagatgttatgtgtgaatatgacataaacttaaacaccttaacgtgagatattaacacctttaataaaactatttgatg |
14983255 |
T |
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| Q |
492 |
at |
493 |
Q |
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|| |
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| T |
14983254 |
at |
14983253 |
T |
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