View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18893_high_7 (Length: 490)

Name: NF18893_high_7
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18893_high_7
NF18893_high_7
[»] chr1 (10 HSPs)
chr1 (10-203)||(17516734-17516926)
chr1 (325-490)||(17517096-17517271)
chr1 (252-331)||(17516956-17517035)
chr1 (249-331)||(15774290-15774371)
chr1 (249-318)||(11405506-11405573)
chr1 (249-324)||(32635184-32635258)
chr1 (249-331)||(3532952-3533032)
chr1 (250-318)||(4354084-4354150)
chr1 (249-331)||(9769556-9769639)
chr1 (271-331)||(10256594-10256653)
[»] chr4 (9 HSPs)
chr4 (249-318)||(33076580-33076648)
chr4 (249-318)||(53815746-53815813)
chr4 (249-318)||(8690264-8690331)
chr4 (249-318)||(9693012-9693079)
chr4 (249-318)||(14149843-14149910)
chr4 (249-318)||(20753103-20753170)
chr4 (249-318)||(28520709-28520776)
chr4 (267-316)||(31587489-31587538)
chr4 (249-318)||(48968188-48968255)
[»] chr2 (4 HSPs)
chr2 (252-331)||(11837025-11837103)
chr2 (249-318)||(580761-580828)
chr2 (249-318)||(34018048-34018115)
chr2 (249-317)||(3179375-3179441)
[»] chr8 (8 HSPs)
chr8 (249-316)||(24074558-24074623)
chr8 (249-318)||(1588817-1588884)
chr8 (249-318)||(13702330-13702397)
chr8 (252-317)||(44070349-44070412)
chr8 (249-331)||(7649565-7649645)
chr8 (249-318)||(2800069-2800136)
chr8 (249-318)||(33570407-33570474)
chr8 (249-317)||(25689366-25689432)
[»] chr3 (12 HSPs)
chr3 (249-324)||(50724411-50724484)
chr3 (249-324)||(50788364-50788437)
chr3 (252-316)||(48173338-48173400)
chr3 (249-316)||(14417920-14417985)
chr3 (249-314)||(24136728-24136793)
chr3 (249-318)||(27183659-27183726)
chr3 (249-318)||(33206807-33206874)
chr3 (249-318)||(36727441-36727508)
chr3 (260-325)||(42823974-42824037)
chr3 (249-318)||(43566774-43566841)
chr3 (249-318)||(46328902-46328969)
chr3 (249-318)||(52030171-52030238)
[»] chr7 (8 HSPs)
chr7 (249-324)||(21882170-21882246)
chr7 (249-318)||(47635100-47635166)
chr7 (249-295)||(22047593-22047637)
chr7 (249-306)||(3948116-3948173)
chr7 (249-318)||(22797953-22798022)
chr7 (249-318)||(47552263-47552330)
chr7 (249-331)||(16916493-16916576)
chr7 (249-317)||(34948157-34948223)
[»] chr6 (4 HSPs)
chr6 (255-318)||(20568239-20568302)
chr6 (250-331)||(29284154-29284234)
chr6 (249-318)||(25020506-25020573)
chr6 (249-317)||(5134412-5134478)
[»] chr5 (2 HSPs)
chr5 (249-318)||(843346-843413)
chr5 (250-331)||(38230184-38230263)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 17516734 - 17516926
Alignment:
Q  10 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516734 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 17516833  T
Q  110 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaacttcaagatgaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17516834 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaactt-aagatgaa 17516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 325 - 490
Target Start/End: Original strand, 17517096 - 17517271
Alignment:
Q  325 tacatattaatcatgcacaaagtcaaaaagacaagacnnnnnnnnnntatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 424  Q
    |||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517096 tacataataatcatgcacaaagtcaaaaagacaagacaaaaaaaaaatatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 17517195  T
Q  425 cat----------ggcatgagaaagagcatcatggcatcatatatatagacaccaagaaaatggtttatatgaatc 490  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517196 catggcatggcatggcatgagaaagagcatcatggcatcatatatatagacaccaagaaaatggtttatatgaatc 17517271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 17516956 - 17517035
Alignment:
Q  252 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||  |||||| |||||||||| |||||||||||||||    
T  17516956 aggtagtttagtggctagaaatttatctttataagatgaataagcggggtgtctgaggttcgaatccgaaccctacatat 17517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 15774290 - 15774371
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||| ||||| ||||||||||    
T  15774290 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctacatat 15774371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 11405573 - 11405506
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  11405573 gtcaggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 11405506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 32635258 - 32635184
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||| ||||| ||||||||||||||||| || | |||||||||||||   |||||||| ||||||||||| |||||    
T  32635258 gtcaagtagcctagtggctagaaattcacctct-taaggtgaataagtggggtgtccggggttcgaaccccaaccc 32635184  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 3532952 - 3533032
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    |||||||||| |||| ||||||| |||| ||| ||||||||||||||   |||||||| |||| |||||||| ||||||||||    
T  3532952 gtcaggtagcctagtagctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttggaacccgacccctacatat 3533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 4354084 - 4354150
Alignment:
Q  250 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||||   ||||||||| ||||||||||    
T  4354084 tcaggtagcctggtggctagaa-ttca-ctttataaggtgaataagtggggtgtccgaagttcgaaccc 4354150  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 9769556 - 9769639
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttat-aaggtgaataagcaaggtgtccgaggttcgaacccgaa-ccctacatat 331  Q
    ||||||||||||||||| ||| |||||| |||| | ||||||||||||   |||||||| ||||||||||| || ||||||||||    
T  9769556 gtcaggtagcttagtggttag-aattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatat 9769639  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 10256594 - 10256653
Alignment:
Q  271 aattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    ||||||||||| ||||||||||||| ||||| |||| ||||| ||||| |||| |||||||    
T  10256594 aattcatcttt-taaggtgaataagtaaggtatccggggttcaaaccccaaccatacatat 10256653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 33076648 - 33076580
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||| | |||||||| |||||||||||    
T  33076648 gtcaggtagcatagtggctataa-ttcatctttttaaggtgaataagtagggtgtccggggttcgaaccc 33076580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 53815813 - 53815746
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||||||||  ||||||  |||||||||   |||||||| |||||||||||    
T  53815813 gtcaggtagcctagtggctagaaattcacttttata--gtgaataagtggggtgtccggggttcgaaccc 53815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 8690331 - 8690264
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  8690331 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 8690264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 9693079 - 9693012
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  9693079 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 9693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 14149910 - 14149843
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  14149910 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 14149843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 20753103 - 20753170
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  20753103 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgtggtgtccggggttcgaaccc 20753170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 28520709 - 28520776
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  28520709 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 28520776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 31587538 - 31587489
Alignment:
Q  267 tagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 316  Q
    ||||||||||||||||||||||||||||| ||| ||| |||  |||||||    
T  31587538 tagaaattcatctttataaggtgaataagtaagatgttcgaaattcgaac 31587489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 48968188 - 48968255
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  48968188 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 48968255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 11837103 - 11837025
Alignment:
Q  252 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||  ||||||||| |||||||| ||||| ||||||||||    
T  11837103 aggtagcctagtggctagaa-ttca-ctttataaggtgaataagtgaggtgtccggggttcgaaccccgacccctacatat 11837025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 580761 - 580828
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||   |||||||| |||||||||||    
T  580761 gtcaggtagcctagtggctagaa-ttcatctt-ataaggtgaataagtggggtgtccggggttcgaaccc 580828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 34018048 - 34018115
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||| ||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  34018048 gtcaggtagcctagtggttagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 34018115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 3179441 - 3179375
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| ||||||||||||    
T  3179441 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacc 3179375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 24074623 - 24074558
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 316  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||  |||||||||||||||||||    
T  24074623 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccgaggttcgaac 24074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 1588884 - 1588817
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   ||||||||||||||||||||    
T  1588884 gtcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtggggtgtccgaggttcgaaccc 1588817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 13702330 - 13702397
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||||||||  ||||||| |||||||||||||    
T  13702330 gtcagctagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtctgaggttcgaaccc 13702397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 44070349 - 44070412
Alignment:
Q  252 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||| | |||||||||||||||||||    
T  44070349 aggtagtttagtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccgaggttcgaacc 44070412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 7649645 - 7649565
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    |||||||||| |||||||||||| |||| |||  |||||||||||||   ||||| |||||||||||||| | ||||||||||    
T  7649645 gtcaggtagcctagtggctagaa-ttcaccttg-taaggtgaataagtggggtgttcgaggttcgaaccccagccctacatat 7649565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 2800136 - 2800069
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  2800136 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 2800069  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 33570407 - 33570474
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||| |||| ||||||||||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  33570407 gtcaagtagtttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 33570474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 25689366 - 25689432
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||||||| |||||| ||||| |||| ||||||||||||| |||| | |||||||| ||||||||||    
T  25689366 gtcaggtagcctagtggttagaa-ttca-ctttataaggtgattaagtagggtgtccggggttcgaacc 25689432  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 50724484 - 50724411
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50724484 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50724411  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 50788364 - 50788437
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50788364 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50788437  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 48173400 - 48173338
Alignment:
Q  252 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 316  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||  ||||||||| |||||||||    
T  48173400 aggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccggggttcgaac 48173338  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 14417985 - 14417920
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 316  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||||    
T  14417985 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaac 14417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 24136728 - 24136793
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcga 314  Q
    |||| ||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||    
T  24136728 gtcaagtagcctagtggctagaaattcacctttttaaagtgaataagtggggtgtccggggttcga 24136793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 27183659 - 27183726
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  27183659 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 27183726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 33206874 - 33206807
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  33206874 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 33206807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 36727441 - 36727508
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||| |||||||||||||| |||| ||| ||||| ||||||||   ||||||||||||||||||||    
T  36727441 gtcaggtaacttagtggctagaa-ttcacctt-ataagatgaataagtggggtgtccgaggttcgaaccc 36727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 42823974 - 42824037
Alignment:
Q  260 tagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccct 325  Q
    ||||||||||||||||| |||| ||| ||||||||| | |||||||||| ||||||||| ||||||    
T  42823974 tagtggctagaaattca-cttt-taaagtgaataagtagggtgtccgagattcgaaccccaaccct 42824037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 43566774 - 43566841
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| |||||||||||||    
T  43566774 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaaccc 43566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 46328902 - 46328969
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  46328902 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 46328969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 52030238 - 52030171
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| ||||||||| ||||||| |||| ||| ||||||||| | |||||||| |||||||||||    
T  52030238 gtcaggtagcctagtggctaaaaattca-cttt-taaagtgaataagtagggtgtccggggttcgaaccc 52030171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 21882170 - 21882246
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatcttt-ataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 324  Q
    |||| ||||| |||| |||||||||||| |||| ||||||||||||||| ||||||||| | ||| |||||| ||||    
T  21882170 gtcaagtagcctagtagctagaaattcacctttcataaggtgaataagcgaggtgtccgggcttcaaacccggaccc 21882246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 47635166 - 47635100
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||||||||   || ||| ||||||||   |||||||||||||||||||||    
T  47635166 gtcaggtagcctagtggctagaaattca---ttttaaagtgaataaatgaggtgtccgaggttcgaaccc 47635100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 22047637 - 22047593
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataag 295  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22047637 gtcaggtagcttagtggctag-aattcatc-ttataaggtgaataag 22047593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 3948173 - 3948116
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccg 306  Q
    |||| |||| ||||||||||||||||||  |||||||| ||||||||  |||||||||    
T  3948173 gtcaagtagtttagtggctagaaattcacatttataagatgaataagtgaggtgtccg 3948116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 22798022 - 22797953
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||| ||||| ||||||||||||||||  |||| || ||||||||||  ||| ||||| |||||||||||    
T  22798022 gtcaagtagcctagtggctagaaattcccctttttatggtgaataagtgaggagtccggggttcgaaccc 22797953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 47552330 - 47552263
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| | |||||||||| |||| ||| |||||||||||||| | |||||||| |||||||||||    
T  47552330 gtcaggtagcctggtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccggggttcgaaccc 47552263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 16916576 - 16916493
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatc-tttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    |||| ||||||||||||||| ||||| ||| ||| |||| ||||||||  |||||||||| ||||||| ||||| ||||||||||    
T  16916576 gtcaagtagcttagtggcta-aaatttatcttttttaagctgaataagtgaggtgtccgaagttcgaaccccgacccctacatat 16916493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 34948223 - 34948157
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| ||||||||||    
T  34948223 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaacc 34948157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 20568239 - 20568302
Alignment:
Q  255 tagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||| ||||| ||||||||||| ||||||||||||||||||   ||||| || |||||||||||    
T  20568239 tagcgtagtgactagaaattcacctttataaggtgaataagtggggtgttcggggttcgaaccc 20568302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 29284234 - 29284154
Alignment:
Q  250 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 331  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||| ||||| ||||||||||    
T  29284234 tcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccccgatccctacatat 29284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 25020506 - 25020573
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  25020506 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 25020573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 5134412 - 5134478
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 317  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| ||||||||||||    
T  5134412 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacc 5134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 843346 - 843413
Alignment:
Q  249 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 318  Q
    |||||||||| |||||||||||| ||||  |||||||||||||||||   |||||||| |||||||||||    
T  843346 gtcaggtagcctagtggctagaa-ttcaa-tttataaggtgaataagtggggtgtccggggttcgaaccc 843413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 38230184 - 38230263
Alignment:
Q  250 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 331  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||  ||||||||| | ||| ||||||| |||| |||||    
T  38230184 tcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtgaggtgtccgggattcaaacccgacccctgcatat 38230263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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