View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_high_8 (Length: 480)
Name: NF18893_high_8
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Original strand, 33306071 - 33306523
Alignment:
| Q |
10 |
aaatgaacaagtggcagatattctcaccaaacctcttcatccatgaccatttacctcattggaaaacaagcttggaacattggatatatattccaccttg |
109 |
Q |
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| T |
33306071 |
aaatgaacaagtggcagatattctcaccaaacctcttcatccatgaccatttacctcattggaaaacaagcttggaacattggatatatattccaccttg |
33306170 |
T |
|
| Q |
110 |
agagagggtggtaaagtgtaattaaatattagtttaggcaattacttgttagacaagtaagtgcgtagttcggtagctaactaactaactgtcttgacag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
33306171 |
agagagggtggtaaagtgtaattaaatattagtttaggcaattacttgttagacaagtaagtgcgtagttcagtaactaactaactaactgtcttgacag |
33306270 |
T |
|
| Q |
210 |
ttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtataaataagtgtgactctacattgtaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33306271 |
ttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtataaataagtgtgactctacattgtaa |
33306370 |
T |
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| Q |
310 |
aattcggattttgtgattacactttcctttccttcaattcattgtt-catagttcatagcagtgtttctctcttttctattggatggagattcaatcctg |
408 |
Q |
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| T |
33306371 |
aattcggattttgtgaatacac-ttcctttccttcaattcattgttccatagttcatagcagtgtttctctcttttctattcaatggagattcaatccta |
33306469 |
T |
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| Q |
409 |
tctttttatgaatcccctacagcagtcagctgcatggtgcaacaactctatggt |
462 |
Q |
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| T |
33306470 |
tctttttatgaatcccctacagcagtcagctgcatggtgcaacaactccatggt |
33306523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 4307513 - 4307406
Alignment:
| Q |
187 |
taactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtataa |
286 |
Q |
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||||||||||||| | |||||||||||||| |||| |||| || |||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||||| |
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| T |
4307513 |
taactaactaactcttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagcttgtgaggtacatagcatagtataa |
4307414 |
T |
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| Q |
287 |
ataagtgt |
294 |
Q |
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|||||||| |
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| T |
4307413 |
ataagtgt |
4307406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 18096436 - 18096366
Alignment:
| Q |
188 |
aactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagc |
261 |
Q |
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|||||||||||||| ||||| |||||||| |||| | | | ||||||||||||||||||||||||||||||| |
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| T |
18096436 |
aactaactaactgttttgactgttatggaagttacagtta---gttatagttaaataactaactatagttaagc |
18096366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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