View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_10 (Length: 466)
Name: NF18893_low_10
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 16911123 - 16911578
Alignment:
| Q |
1 |
tcctggtacccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911123 |
tcctggtacccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgaca |
16911222 |
T |
|
| Q |
101 |
agtcacaagaccattgatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911223 |
agtcacaagaccattgatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatca |
16911322 |
T |
|
| Q |
201 |
aaatttttgacatcgtggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911323 |
aaatttttgacatcgtggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttt |
16911422 |
T |
|
| Q |
301 |
tggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911423 |
tggctctagcaatatttggattgaccatgtttccatgagaaactgtagagatggactagttgatgccattatgggatccactgctattaccatctccaat |
16911522 |
T |
|
| Q |
401 |
agccatttcacagatcacaacgaggtaattagtaattaattcaatagttacctatg |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
16911523 |
agccatttcacagatcacaacgaggtaattagtaattaattcgatagttacttatg |
16911578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 16915528 - 16915983
Alignment:
| Q |
1 |
tcctggtacccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgaca |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
16915528 |
tcctggtacccttaggcatgcagttacaagaaatgggcctttgtggatcatcttcgctcgtagcatgaagattaggctcaaccaggagctcataatggca |
16915627 |
T |
|
| Q |
101 |
agtcacaagaccattgatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatca |
200 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16915628 |
ggtaacaagaccattgatggacgaggagctgatgttaccattgctaatggtgctggtattactatccagttcatcgagaatgtgatcatccatgggatca |
16915727 |
T |
|
| Q |
201 |
aaatttttgacatcgtggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttt |
300 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||||| || ||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
16915728 |
aaatttatgacattatggttggaagtggtggacttgttagagatagtgaggaccattatggtctaaggactattagtgatggtgatggaatttcaatttt |
16915827 |
T |
|
| Q |
301 |
tggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaat |
400 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16915828 |
tggctcaagccatatttggattgaccatgtttccatgagaaactgcagagatggactcattgatgccattatgggatccactgctattaccatctccaat |
16915927 |
T |
|
| Q |
401 |
agccatttcacagatcacaacgaggtaattagtaattaattcaatagttacctatg |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
16915928 |
agccatttcacagatcacaacgaggtaattagtaattaattcgatagttacttatg |
16915983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1872684 - 1872577
Alignment:
| Q |
1 |
tcctggtacccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1872684 |
tcctggtacccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgaca |
1872585 |
T |
|
| Q |
101 |
agtcacaa |
108 |
Q |
| |
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|||||||| |
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|
| T |
1872584 |
agtcacaa |
1872577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 426
Target Start/End: Complemental strand, 25007205 - 25007053
Alignment:
| Q |
274 |
gagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatg |
373 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||| ||| |||||||||| ||||||||||||||||| |||| ||||| | ||||||| || ||| |
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| T |
25007205 |
gagtgatggtgatggtatttccatctttggtgctagtaatgtttggattgatcatgtttccatgagaaattgtactgatggtttgattgatgctataatg |
25007106 |
T |
|
| Q |
374 |
ggatccactgctattaccatctccaatagccatttcacagatcacaacgaggt |
426 |
Q |
| |
|
|| |||||||||||||||||||| || || || ||||| || ||||| ||||| |
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|
| T |
25007105 |
ggttccactgctattaccatctctaacagtcacttcactgaccacaatgaggt |
25007053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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