View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18893_low_13 (Length: 344)

Name: NF18893_low_13
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18893_low_13
NF18893_low_13
[»] chr5 (2 HSPs)
chr5 (1-155)||(1537675-1537830)
chr5 (208-266)||(1537850-1537908)
[»] chr7 (5 HSPs)
chr7 (58-123)||(46641786-46641851)
chr7 (58-142)||(46172995-46173079)
chr7 (200-262)||(46620350-46620412)
chr7 (199-262)||(46639067-46639130)
chr7 (58-142)||(46630704-46630788)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1537675 - 1537830
Alignment:
Q  1 ataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaacagcatgctgatataaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537675 ataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaacagcatgctgatataaatct 1537774  T
Q  101 ctggagacaaatcactagaaacaaaccattgaaagttagagcg-ttgcaatcagaa 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1537775 ctggagacaaatcactagaaacaaaccattgaaagttagagcgtttgcaatcagaa 1537830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 1537850 - 1537908
Alignment:
Q  208 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537850 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgc 1537908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 46641851 - 46641786
Alignment:
Q  58 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaaca 123  Q
    ||||||||||||||||||||||| | || ||||||||||||||  ||||||||| |||||||||||    
T  46641851 cttgtgatgttgattctttggaaaaacaggctgatataaatctgaggagacaaagcactagaaaca 46641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 46173079 - 46172995
Alignment:
Q  58 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc 142  Q
    |||||||||||| |||||||||||| ||  |||||||||||| | ||||||| | ||||||||||| ||| |||| |||||||||    
T  46173079 cttgtgatgttggttctttggaacaacagcctgatataaatcccaggagacagagcactagaaacagaccgttgacagttagagc 46172995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 46620350 - 46620412
Alignment:
Q  200 atccagacagcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg 262  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||   ||||||||| ||||    
T  46620350 atccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatg 46620412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 46639067 - 46639130
Alignment:
Q  199 catccagacagcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg 262  Q
    ||||||||||  ||||||||||||||||||||| |||||| ||||||   ||||||||| ||||    
T  46639067 catccagacacaccaagatcctttcaatccttgtcgcaaggctcgtacatgaggcaaaataatg 46639130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 46630704 - 46630788
Alignment:
Q  58 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc 142  Q
    |||||||||||| ||| |||||||| ||  ||||||||||||   ||||||| | || |||||| | |||||||| |||||||||    
T  46630704 cttgtgatgttggttcgttggaacaacagcctgatataaatccgaggagacagagcaatagaaaaagaccattgacagttagagc 46630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University