View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18893_low_14 (Length: 338)
Name: NF18893_low_14
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 31653622 - 31653476
Alignment:
| Q |
187 |
tctcttttgatgtcttaatccaagtcactaacttactaatttaaaaacaacatatgatcaatatcttatcccattagatatttttctctcttcaaatcga |
286 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
31653622 |
tctctttttgtgtcttaatccaagtcactaacttactaatttaaaaacaacatatgatcaatatcttatcccattagatatttttctctctccaaatcaa |
31653523 |
T |
|
| Q |
287 |
agaaacagagaagatattctaaccctcccaccaaaccaaaccttgtt |
333 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31653522 |
agaaatagagaagaaattctaaccctcccaccaaaccaaaccttgtt |
31653476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 31653856 - 31653685
Alignment:
| Q |
19 |
gaatttggtatttccacttgtgtgagagagtttataatagtgtttatcactttttctacacaca--tataaactttctttagacgatctagctattacaa |
116 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31653856 |
gaatttgatatttccacttatgtgagagagtttataataatgtttatcaccttttctacacacacatataaactttctttaggcgatctagccattacaa |
31653757 |
T |
|
| Q |
117 |
gataaatgtgctgtttcgcaatgattatgataaaatttcacatctctattctcttcaattcttcatttgctc |
188 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31653756 |
gataaatgtgctgttttgcaatgatcatgacaaaatttcacatctctattctcttcaattctttatttgctc |
31653685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University