View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_16 (Length: 301)
Name: NF18893_low_16
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 33011394 - 33011202
Alignment:
| Q |
14 |
tctataagtcaaaaataatccatagccctcgctaacttttgtgtgtcttgcacaatctcgacgtgaataaaatttgtatttcnnnnnnnnnnnnnnnnta |
113 |
Q |
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| T |
33011394 |
tctataagtcaaaaataatccataaccctcgctagcttttgtgtgtcttgcacaatctcgacgtgaaaaaaatttgcatttcaaaataaaaataaaaata |
33011295 |
T |
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| Q |
114 |
tgcaagtgatactggtaagaggtctgacatatatattttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagcttcc |
206 |
Q |
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| T |
33011294 |
tgcaagtgatacaggtaagaggtctgacatatatattttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagcttcc |
33011202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 33010870 - 33010958
Alignment:
| Q |
152 |
tggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagcttccttagatgtagctttttcatctatcttcttttgaa |
240 |
Q |
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| T |
33010870 |
tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaa |
33010958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 32683407 - 32683328
Alignment:
| Q |
190 |
ttggaacttcagcttccttagatgtagctttttcatctatcttcttttgaagttgaactctcaatttttcaatttcaact |
269 |
Q |
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| T |
32683407 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaact |
32683328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 32685117 - 32685038
Alignment:
| Q |
190 |
ttggaacttcagcttccttagatgtagctttttcatctatcttcttttgaagttgaactctcaatttttcaatttcaact |
269 |
Q |
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| T |
32685117 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaact |
32685038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 32683475 - 32683409
Alignment:
| Q |
158 |
tctttcttcttaatcttcgttctcctgctggtttggaacttcagcttccttagatgtagctttttca |
224 |
Q |
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| T |
32683475 |
tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca |
32683409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 32685185 - 32685119
Alignment:
| Q |
158 |
tctttcttcttaatcttcgttctcctgctggtttggaacttcagcttccttagatgtagctttttca |
224 |
Q |
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| T |
32685185 |
tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca |
32685119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 28734832 - 28734759
Alignment:
| Q |
128 |
gtaagaggtctgacatatatattttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcag |
201 |
Q |
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| T |
28734832 |
gtaagaggtctgacatatacattttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag |
28734759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 34326725 - 34326763
Alignment:
| Q |
50 |
ttttgtgtgtcttgcacaatctcgacgtgaataaaattt |
88 |
Q |
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| T |
34326725 |
ttttgtgcgtcttgcacaatctcgacgtgaataaaattt |
34326763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 45218700 - 45218741
Alignment:
| Q |
49 |
cttttgtgtgtcttgcacaatctcgacgtgaataaaatttgt |
90 |
Q |
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| T |
45218700 |
cttttgtgcgtcttgcacagtctcgacgtgaataaaatttgt |
45218741 |
T |
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