View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18893_low_17 (Length: 235)

Name: NF18893_low_17
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18893_low_17
NF18893_low_17
[»] chr1 (6 HSPs)
chr1 (52-223)||(24157223-24157394)
chr1 (52-223)||(36233649-36233820)
chr1 (52-223)||(20190599-20190770)
chr1 (128-223)||(20189042-20189137)
chr1 (1-56)||(24156955-24157010)
chr1 (4-58)||(20190327-20190382)
[»] chr7 (5 HSPs)
chr7 (54-223)||(7843020-7843189)
chr7 (52-223)||(9595605-9595776)
chr7 (52-223)||(9646568-9646739)
chr7 (59-223)||(9647111-9647275)
chr7 (59-127)||(9596148-9596216)
[»] chr5 (6 HSPs)
chr5 (52-223)||(244610-244781)
chr5 (52-223)||(29949928-29950099)
chr5 (52-223)||(29951566-29951737)
chr5 (52-143)||(27401974-27402065)
chr5 (4-58)||(29950313-29950368)
chr5 (4-55)||(29951951-29952003)
[»] chr8 (1 HSPs)
chr8 (52-223)||(8366451-8366622)
[»] chr4 (12 HSPs)
chr4 (52-223)||(9166997-9167168)
chr4 (52-223)||(15017812-15017983)
chr4 (52-223)||(15019452-15019623)
chr4 (59-223)||(13518136-13518300)
chr4 (54-223)||(39488321-39488490)
chr4 (52-192)||(19458004-19458144)
chr4 (52-196)||(19459701-19459845)
chr4 (85-196)||(19460552-19460661)
chr4 (52-196)||(19456296-19456435)
chr4 (52-146)||(24663584-24663678)
chr4 (67-128)||(21484638-21484699)
chr4 (52-162)||(22474101-22474211)
[»] chr2 (1 HSPs)
chr2 (52-223)||(22300065-22300236)
[»] scaffold0269 (1 HSPs)
scaffold0269 (55-223)||(1575-1743)
[»] chr3 (4 HSPs)
chr3 (126-223)||(25531980-25532077)
chr3 (52-158)||(2693788-2693897)
chr3 (105-164)||(2683933-2683989)
chr3 (26-58)||(5553691-5553723)
[»] scaffold0146 (1 HSPs)
scaffold0146 (26-58)||(6834-6866)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 24157223 - 24157394
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  24157223 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagcaaatgcagccactaattacaataatg 24157322  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24157323 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatga 24157394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 36233820 - 36233649
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  36233820 atcattttcgtgctctatttatatgagcttattacatgatgattttcactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatg 36233721  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  36233720 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatga 36233649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 20190599 - 20190770
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  20190599 atcattttcgtgatctatttatatgaggttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatg 20190698  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
     |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  20190699 atttggtggctgattaatgcaaataaaagattacaaaatgactctctaagttggtggctaatcaatgcatga 20190770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 20189042 - 20189137
Alignment:
Q  128 atgcagccactaattgcaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20189042 atgcaaccactaattacaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatga 20189137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24157010 - 24156955
Alignment:
Q  1 ccttttccaccaaaaatatttatagttgcttccgacggctccgtgacattcatcat 56  Q
    |||||||||||| || |||| |||||||||||||||||||||| |||| |||||||    
T  24157010 ccttttccaccataattattcatagttgcttccgacggctccgcgacactcatcat 24156955  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 20190382 - 20190327
Alignment:
Q  4 tttccaccaaaaatatttata-gttgcttccgacggctccgtgacattcatcattt 58  Q
    |||||||||| | |||| ||| |||||||||||||||||||||||| |||||||||    
T  20190382 tttccaccaacattattcataagttgcttccgacggctccgtgacactcatcattt 20190327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 7843189 - 7843020
Alignment:
Q  54 cattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgtt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7843189 cattttcgtgctctatttatatgagcttattacatgatgattttgactcaaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgtt 7843090  T
Q  154 ttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7843089 ttggtggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaatcaatgcatga 7843020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 9595605 - 9595776
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9595605 atcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatg 9595704  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9595705 ttttggtggctgattaattcaaataaaagtttacaaaatgactctctaagttggtggctaatcaatgcatga 9595776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 9646568 - 9646739
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9646568 atcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatg 9646667  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9646668 ttttggtggctgattaattcaaataaaagtttacaaaatgactctctaagttggtggctaatcaatgcatga 9646739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 9647111 - 9647275
Alignment:
Q  59 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgttttggt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  9647111 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggt 9647210  T
Q  159 ggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9647211 ggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaataaatgcatga 9647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 9596148 - 9596216
Alignment:
Q  59 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9596148 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa 9596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 244610 - 244781
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  244610 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatg 244709  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  244710 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatga 244781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 29950099 - 29949928
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  29950099 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatg 29950000  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  29949999 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagctggtggctaatcaatgcatga 29949928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 29951737 - 29951566
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  29951737 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatg 29951638  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  29951637 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagctggtggctaatcaatgcatga 29951566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 27402065 - 27401974
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattg 143  Q
    |||||||| ||||||| |||||||| ||| |||||| ||||  ||||| |||||||||||  ||||||||||  ||||||||||||||||||    
T  27402065 atcatttttgtgctctttttatatgggctaattacaagatggctttgattctaaaactctcagaaaatgaaaataaatgcagccactaattg 27401974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 29950313 - 29950368
Alignment:
Q  4 tttccaccaaaaatatttatagttg-cttccgacggctccgtgacattcatcattt 58  Q
    |||||||||| |||||| ||| ||  ||||||||||||||||||||||||||||||    
T  29950313 tttccaccaacaatattcataattcacttccgacggctccgtgacattcatcattt 29950368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 29951951 - 29952003
Alignment:
Q  4 tttccaccaaaaatatttatagttg-cttccgacggctccgtgacattcatca 55  Q
    |||||||||| |||||| ||| ||  |||||||||||||||||||||||||||    
T  29951951 tttccaccaacaatattcataattcacttccgacggctccgtgacattcatca 29952003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 8366622 - 8366451
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8366622 atcattttcgtgctctatttatatgagcttattacatgaggactttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatg 8366523  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  8366522 ttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatga 8366451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 9167168 - 9166997
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||    
T  9167168 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatccaaccactaattacaataatg 9167069  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  9167068 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatga 9166997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 15017812 - 15017983
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  15017812 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagaaaatgcaaccactaattacaataatg 15017911  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  15017912 ttttggtggctgattaatgcaaataaaatgttacaaaatgactctctaagttggtggctaatcaatgcatga 15017983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 15019452 - 15019623
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  15019452 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataatg 15019551  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  15019552 ttttggtggctgattaatgcaaatgaaatgttacaaaatgactctctaagttggtggctaatcaatgcatga 15019623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 13518136 - 13518300
Alignment:
Q  59 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgttttggt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  13518136 tcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggt 13518235  T
Q  159 ggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  13518236 ggctgattaatgcaaataaaaggttacaaaatgactctctaagttggtggctaataaatgcatga 13518300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 39488321 - 39488490
Alignment:
Q  54 cattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgtt 153  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  39488321 cattttcgtgctctatctatatgagcatattacatgttgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgtt 39488420  T
Q  154 ttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  39488421 ttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatga 39488490  T

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Target: chr4; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 19458144 - 19458004
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||| || ||||||||||| ||||||||    
T  19458144 atcattttcatgctctatttatatgagcctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattccaataatg 19458045  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatga 192  Q
    |||| ||||||||||| |||||| |||||||||||||||||    
T  19458044 ttttagtggctgattagtgcaaagaaaaggttacaaaatga 19458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 19459845 - 19459701
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  19459845 atcattttcgtgcactatttatatgaacatattacatgattattttgattctaaaactcttagaaaatgaaaggaaatgcatccattaattgcaataatg 19459746  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactct 196  Q
    ||||||||| | |||| |||||| ||||||||| |||| ||||||    
T  19459745 ttttggtggttaattagtgcaaagaaaaggttataaaacgactct 19459701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 19460552 - 19460661
Alignment:
Q  85 acatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgttttggtggctgattaatgcaaataaaaggtta 184  Q
    ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||  |||    
T  19460552 acatgatgattttgattctaaaactctttgaaaatgaaatgaaatgcagccactaattacaataatgttttggtggttgattaatgcaaaaaaaa--tta 19460649  T
Q  185 caaaatgactct 196  Q
    ||||||||||||    
T  19460650 caaaatgactct 19460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 19456435 - 19456296
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    |||||| ||||||||||||||||||||||||||| || ||   ||||  |||||||||||| |||| |||||||||||||| | ||||||||||||||||    
T  19456435 atcattgtcgtgctctatttatatgagcttattatataat---tttggttctaaaactcttagaaa-tgaaaggaaatgcatctactaattgcaataatg 19456340  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactct 196  Q
    |||||| | ||||||| |||||| |||| |||||| |||||||||    
T  19456339 ttttgg-gactgattagtgcaaagaaaatgttacataatgactct 19456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 24663584 - 24663678
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaa 146  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||| |||||||||||| | | |||||||||    
T  24663584 atcattttcgtgctctatttatatgattttattacatgatgattttgattctaaaactcttagaaaataaaaggaaatgcatctattaattgcaa 24663678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 21484638 - 21484699
Alignment:
Q  67 tatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaa 128  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  21484638 tatttatatgcgtttattacatgatgattttgattctaaaactcttacaaaatgaaaggaaa 21484699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 22474211 - 22474101
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    |||||||||||||||||||||||||| || |||||| |||  || | | ||| |||||||  |||||| |||||||||||| ||| |||||   | ||||    
T  22474211 atcattttcgtgctctatttatatgaactcattacaagatagttctaattctgaaactctaagaaaataaaaggaaatgcaaccattaattatcacaatg 22474112  T
Q  152 ttttggtggct 162  Q
    |||||||||||    
T  22474111 ttttggtggct 22474101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 22300065 - 22300236
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatg 151  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  22300065 atcattttcgtgctctatttatatgagcttattacatgatgactttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatg 22300164  T
Q  152 ttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  22300165 ttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatga 22300236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 1575 - 1743
Alignment:
Q  55 attttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgttt 154  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  1575 attttcgtgctatatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatgttt 1674  T
Q  155 tggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  1675 tggtggctgattaatgcaaataagaggttacaaaatgactctctaagttagtggctaatcaatgcatga 1743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 25532077 - 25531980
Alignment:
Q  126 aaatgcagccactaattgcaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctttaagttggtggctaatcaatgcatga 223  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25532077 aaatgcagccactaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctctaagttggtggctaatcaatgcatga 25531980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 2693897 - 2693788
Alignment:
Q  52 atcattttcgtgctctatttatatgagcttattacatgatga---ttttgactctaaaactcttggaaaatgaaaggaaatgcagccactaattgcaata 148  Q
    ||||||||||||  || ||||| || ||||| |||||||||    |||||| ||| |||||||| |||||| |||| ||||||| ||||||||||||||     
T  2693897 atcattttcgtgtcctctttatgtgggcttagtacatgatgcaggttttgattctgaaactcttagaaaataaaagtaaatgcaaccactaattgcaatt 2693798  T
Q  149 atgttttggt 158  Q
    ||||||||||    
T  2693797 atgttttggt 2693788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 2683989 - 2683933
Alignment:
Q  105 aaactcttggaaaatgaaaggaaatgcagccactaattgcaataatgttttggtggctga 164  Q
    |||||||| ||||||||| |||||||||||   ||||| |||||||||||||||||||||    
T  2683989 aaactcttagaaaatgaacggaaatgcagc---taatttcaataatgttttggtggctga 2683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 5553691 - 5553723
Alignment:
Q  26 ttgcttccgacggctccgtgacattcatcattt 58  Q
    ||||||||||||||||||||||| |||||||||    
T  5553691 ttgcttccgacggctccgtgacactcatcattt 5553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 6834 - 6866
Alignment:
Q  26 ttgcttccgacggctccgtgacattcatcattt 58  Q
    ||||||||||||||||||||||| |||||||||    
T  6834 ttgcttccgacggctccgtgacactcatcattt 6866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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